HsaEX1023355 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:66071558-66094494:-
Coord C1 exon
chr15:66094402-66094494
Coord A exon
chr15:66082425-66082468
Coord C2 exon
chr15:66071558-66071658
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATAGATAGATAGATAGATAGATT
3' ss Score
-15.55
5' ss Seq
TTAGTAGAG
5' ss Score
-12.4
Exon sequences
Seq C1 exon
CCCTGTGTACGGAGGAGTGTGTGCACGGCCGCTGCGTTTCCCCGGACACCTGCCACTGCGAGCCTGGCTGGGGAGGGCCCGACTGCTCCAGCG
Seq A exon
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
Seq C2 exon
GTCACAGCCCCAACTGGGAACCCGAGCCCTGGATGGTACAGATCATGAGAAATGACAGATCCCCGATGCAGCTGCAGGGCCTTTCTGGGGAGAGCACACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'9-10,'9-9,10-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(82.4=87.5)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000395614fB19779
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTACGGAGGAGTGTGT
R:
ATCTGTACCATCCAGGGCTCG
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains