HsaEX6075427 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:65964952-66094494:-
Coord C1 exon
chr15:66094402-66094494
Coord A exon
chr15:65982242-65982488
Coord C2 exon
chr15:65964952-65971230
Length
247 bp
Sequences
Splice sites
3' ss Seq
GACTGTCCCGTCTCTTGCAGGCT
3' ss Score
10.89
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CCCTGTGTACGGAGGAGTGTGTGCACGGCCGCTGCGTTTCCCCGGACACCTGCCACTGCGAGCCTGGCTGGGGAGGGCCCGACTGCTCCAGCG
Seq A exon
GCTGCGACAGCGACCACTGGGGGCCCCACTGCAGCAACCGGTGCCAGTGCCAGAACGGCGCCCTGTGTAACCCCATCACAGGCGCCTGCGTGTGCGCCGCCGGCTTCCGTGGATGGCGCTGCGAGGAGCTCTGCGCACCTGGCACCCACGGCAAGGGATGCCAGCTGCCGTGCCAGTGCCGACACGGTGCCAGCTGCGACCCCCGCGCCGGCGAGTGCCTCTGCGCACCTGGCTACACCGGCGTCTA
Seq C2 exon
CTCCTCCACCTGCTTTTCCATCTTCCAGTGTGTGACATCCTTTGTCTCCTATTCCTCTTTTCTTTGTGGGTTTATACCTGTACCCCTTTGACTCTCATGTCAGCTGGGTTTGAGAAAGAAGCTGAGCAAAGTGCACGTCTCCATACCAGCATGTTTACTCAGCCTCCTTCCTTATGTCTTCTCAGCACTTTACTGTGTACCCATGTGAGAGTACTTACTGCCTTGTACTTAGCGGTTTTTTTGGCTCTTTCTGTGGTAGACTAGGAGGACAGGAATCAAATCGAATCACCCCTAGTGTCTCACACAGCACCTCGTATACAATAGGCAGTTCCTAAATTGTGCTGAATAACTGGATGAGCAAGTTGGCCTCAGTCTCCCATCTCCCATCTCTAAGAGGAGGGCTTTGGAGCCCTGGTGTCCAGCTGTCTGAACTTCTTCTGGGAAGTTGGGTGGTCCCTGGAGCCACAGCAGGTGTGCCATTCCCAGGAAAGTTTGGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'9-27,'9-21,15-27=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=NA
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(82.4=87.5)
A:
PF0005319=Laminin_EGF=PU(58.1=30.1)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTACGGAGGAGTGTGT
R:
ACTCTCACATGGGTACACAGT
Band lengths:
304-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains