HsaEX1024277 @ hg38
Exon Skipping
Gene
ENSG00000102738 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr13:40749138-40754092:-
Coord C1 exon
chr13:40754019-40754092
Coord A exon
chr13:40752273-40752469
Coord C2 exon
chr13:40749138-40749281
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCATTTGAATTGAAGGTG
3' ss Score
5.96
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAAAAATATATTCACAGGGAAAAGACTTAATATTTTTGACATGATGGCAGTTACTAAAGAAGCACCTGAAACAG
Seq A exon
GTGAAGCTAAAAGAACAACCCCCTTCTTATATTACAAAAACTGCATTCTCTTGTGTATGATGAGAAGGAAGTGCAAAATGCGTAGGGACAAGGAATCGCCTCTTCCCTGCTCAAATGGTTAAGCGTGCATCAGAAAGGAATTTCTTGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTCGGAGGCTGAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATGTGGAATTTGCTAAGCAGTTAGCCACAGTAAATGAACAACCCCTTCAGAATGGATTTGAAGAGCTGATCCAGTGGACAAAAGAGGGGAAACTATGGGAGTTCCCAATTAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102738_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.325 C2=0.010
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(13.0=100)
A:
PF154331=MRP-S31=PD(7.3=34.1)
C2:
PF154331=MRP-S31=FE(16.2=100)
Main Inclusion Isoform:
ENST00000323563fB20234
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTGACATGATGGCAGTTACT
R:
TGCTTCATTGTTAATTGGGAACTCC
Band lengths:
186-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains