HsaINT0105325 @ hg38
Intron Retention
Gene
ENSG00000102738 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr13:40749138-40754092:-
Coord C1 exon
chr13:40754019-40754092
Coord A exon
chr13:40749282-40754018
Coord C2 exon
chr13:40749138-40749281
Length
4737 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
AAAATGTCTTTATTATGTAGACA
3' ss Score
5.49
Exon sequences
Seq C1 exon
GAAAAATATATTCACAGGGAAAAGACTTAATATTTTTGACATGATGGCAGTTACTAAAGAAGCACCTGAAACAG
Seq A exon
GTTTGTTAAGAATAACACTCTTTCTCAGGTGGAGAAACATTCCATCGTTCCAGGATGTCCTTAGTGTTCTAATAGTTTGGATATTTTAATATTCCATTCTGTCATTGGCCTGGATCCTGCTTATGAATGTGGCGGTTGTTACAAGGAAAACTTGGGACTGTAATGTCCGCCTAAACTGGGAAGGCGTCAAGAGACCAAAGAATAATTTGGGCAAGTCCAGCTTGATGAATAGATGAGTTTACTAGAACTTACATTACATACTGGACATTCCTGAGCAGCTCTAGAGTCACCCTGCCTCCCATCTCTAAGCAGCCTTTCAGCTAATGTTTTGTTTGCCTACTCTGTGTGCGCGATGACTGTTACCTGATATGTTCCCAGGTATGCCCTGGGATGTTTGGGTTCTCAGGGACACCTGCTCCTCAGCTAGGCACCATGGCCTTGGCTCCCTGCTCAGCCTTCAGGATCCAAGCAACACACATACACTCTTAAGTAACCTGGTGGGGGTTACTACAGTTGTCAACATTGCTAGTTTCGGTCAGGCTTCCCCCTTGAAATGTTGCATTCTGTGAGACAGCGGGAGGTAAGTACTACCGATTACCGAATCCAGAGGTCCAGATTAGCTACTAATTTGAGTTAGAACAATAATAATCAACTACCATTTACAGTGTATCTCTATGCTATTACATAAAGATATACTGGTTCCTGCCCTTAGGCAGCTTAGAAGAGGAGACAGCATTTACAAAATAACTTACTGAAGTGACTTAGTGATTGTTTAGGAGATGGGAAGAACATTCAAGGAATATATTTAACAGACTTGTAGTGTTTTCTTTGGGTAAGAAATTTGCCATTTTAAGTCTAAAAGAGAAATAAGAGTGTCCTCTTGCTTGACATTAAATTTAGTTTACTAGTAAAATAAATGAAGAAACTTAATACAAATGGTCTCTAGTGTATAAGTGATGAGCATTTCTAAAGAAAATAAGTTAGTTTTTTGGATATTGGTAGAAACAATGTTGTATGTGGACTTGGGAGGCTGAGACAACATGATGGCTTGCGACTAGGAGTTCAAGACCAGCCTGGGCAACATAGCCCCTTTCTCTAAAAAATAGAAAAAAATTATCCAGGCATGGTGGTGCATGCCTGTAATCCTAGTGACTTGGGAAGTTGAAGTGGCAGGATCACTGGAGCCCAGAATTTGAGGCTGCTGTGAGCTATGATTGTGCTATAACACTCCATCCTAAGAATCAAAGTGAGACTCCATCTCGAAGGGGAAAAAAAAAAAGAATGTTGTATATGATAGATAAGTTCCTAGGCGGGCCTCCAAAGGCTCATTTAATCTTTCTACAGTTACTTATACGAACTTTTGATTTTCCCTCTATTTAATAGACTATTAGGGGCTATATCTCATTCATGTAGCACCTACTCATGTGGCTTACAGATCATAGGAACTAGGTGTCTTAAATCTTAAATTCTTTTTTGAACAAACTGTACTGTAAAATATATATCTGTAGAGGAAAGAAGTTAATTCAGTGTTTGTTCATTTGAATTGAAGGTGAAGCTAAAAGAACAACCCCCTTCTTATATTACAAAAACTGCATTCTCTTGTGTATGATGAGAAGGAAGTGCAAAATGCGTAGGGACAAGGAATCGCCTCTTCCCTGCTCAAATGGTTAAGCGTGCATCAGAAAGGAATTTCTTGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTCGGAGGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACCAAAAATACAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGAAGGTTGAGGCAGGAGAATCACTTGCACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTACCATTACACTCCAGCCTAAGTGACGAGCAAAACTGTCTCAAAAAAAAAAAGAAAGAAAGAAATTGGTTGTCAGGGCAGCTGCTGTTGTCCAGCCAAAAGAGGCACTTGAAGATTCTTGAGAGTCTTGAAGGAACCATCTTACTTTTTAAAATAAAAAAATCTTATTTCTAAAACTGAAGTTAGTTGGCAAGGAAGCATTGAAGTTTTATATATTTTATAAAACAGTATCAAATTATTATACTCTAGTTAGGAAAATAGCACACAACTTTAATAATTTAATGAAGGTACTGTTTAAATATGCTATACTTGCATGAGTCTAAAGAATGGTTTTTGTTCCCAATTAAATACAAGAATAGCAAAATGTGGAAACGTAAATTTAGCAATTGTTCACTGTTGTTTTCCCACCACCTGAAATAATGCTGGAAATACAGTTGGCATTCAGTAATTTTTTTATTGACTGATTGAATGAGTTATTCTGTTCCATGATTCCCATGTCTTGTTCCCCACTAAGTTCTTACCACTGCTACAAAGGATATACTCATAGGCCCTACTGGTTATCCTAGAGTCGACAGGCAGTATAGCTTAACAGAAAGAGTGTTGGTGTTGTGTAGAACTGGATTCAAATTCAGATTCTGCCACACTAACTTTTCCCCACCTATAAAATGAGGGCTACTACATACATCTCAAAGATTAAGTGAGGTAATATGAGAAAAGTGTCAGGCACAGTGCCTGGAACATAGTACATATTTAACAAATGCTTACAAATATTAGCAAGTGTAAAAATATAGTGATGATCCTAATGATGATGGAAAAGACATAGGTGGGTCAGTGACCACCAAGTAAAAGATAACTGAGACAATTAAGTTATTTTTGATGTGATTGCTCTGTAAATGTGGCTAGTTAAGGCTAACAACTGATTGTTTCCCAGTATCAGATGATCTAGGCCAAATATCTAGCAGTCAGTGTGTGGCTAGATACATTTCTGCACATAAAGGCTCATAGAAATAGATTCAGAAAAAGCAAAATAGATAAAATAAGGCTTACCCAGGTAGAAGAGTAATTGAGCTATTTGTTGATATGCTTTAGTGGGGGCTTGGCAAAAGTGGGTAAAGAGGTAAGCTGGAGGATAGGTCATATGCAATCTATGCCTCTAACCCGGAAACTGTTCCTAGGAATTTGTTCTAAGGAAATATTACAGATACGCGCTAAAGTGTAACTACAAGGATATTTGTCACTATAGTATTTAAAAGAGAAAATATATAAATGATCAAAATATTGAATAGTAAGGGATTGTGATACATATATATGTAATATATATATATATATATATATATATATATAAAATGGGATACTAATGCAAGCATTCAGTGAAAAAAGTAGATTACCAAACTATACGATCCTCATTTATTTTAAAAAGTGATATCACCCAGAAAAAAATAAGAAAGATAAAAGATGTTGGTAAAATAACTAAAGAATAAAAATATAGGGGAAAAGGTAGCCAAGGGATAGATATTGATATTCATTTTCTTTTTACAACTTTATTAAGTTGTAATTTGTGTGCAACAGATTGCATATATTTGAAGTATATAACTTGACTAATTTTGACAAATATATACACCCATGAAACTACCAGTTATAATTTTAAACATTTTCATGACCCTCCAAAGTTTCCTTGTGTCCTTTTGCAATACACGCAAACACACACACCCCACACACAGTATGTAGGCAACCATTGATCTGCCTTCTGTTACAATAGGTTAGTTTGCATCTTTTAGAACTGTACATAACTGAAATCACATAGTATATACTCCTTTGCATCTGGCTTCTTTGACTCAGCATAATGATTTGAGATTCATCCATATGCTGTTACATGTACTAGTAACGCATTTTTATTACTGAGTAGTATACAATTGCATGGCTGTATCACATTTTTGTACCTATTCACCTGTTAGTGGACATTTGGGTTGTTTCCCAAATTACAACCCACATTTGGCTATTACAAAGAAAGCTGCCATTAACTTTTGTGTACAAGTCTTTGTATGGACATGTATTATCTCTTGGGTGAATATATCCAGGGATGAAACGACTATGTTGAATAATAGATATATTTTAACTTTTTAAGAAGCTATCAAACTGTTTTCCAAGGTGGTTGTACCATTTTATGTTCCCAGCAGCAGTAACTGGTGAGAATATGGCTCATTTTCAAAAGATGATCTGAAGTTTCAAAAGTAAATAAGTTATTGAAACATGTAATTTGATAGTGGTAATTAGCCAACATGATAATACGTTACTCATAGGGTTTGTTGTGAGGATTACATGCACTAATGCATAAAATGCATTTAAGCGCAGAGGAAGTACTCAGTATTCATTAGCAGTTTTATTGTTATTCTGTTAATTTAACTTCTTTGGTTGTTAACAGTAGTACATTTGTGACTAATTTCGATAGACTAAAAATAAAGATAAACAGGCTAGACTTTAAAAATGAAAGTCACATATTCTACAAAAAACATTCACATTCATAAAAATACCCTTAAACAAAATACAAATTTATTTTTTTCTTTCCAGTAGAGGGGGCAGTGATTACCTGGCATTGTTGCAAAACAAAAGTTAAGCTTGCCATTATTGTAGTTACAATTTTTAATATAATTTTTGCAGTTATCTCTCAGTAACTTTTTATTATATACTATTTAATTATGAATGTCAGGGTCTGAAAAATACATGGTCAATTCAGGATTGGTTGTAACTTTTAAAAAAAGATACTTACATTGACTTGTTGTTATCTAAAATGTCTTTATTATGTAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATGTGGAATTTGCTAAGCAGTTAGCCACAGTAAATGAACAACCCCTTCAGAATGGATTTGAAGAGCTGATCCAGTGGACAAAAGAGGGGAAACTATGGGAGTTCCCAATTAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102738:ENST00000323563:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(13.0=100)
A:
NA
C2:
PF154331=MRP-S31=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development