MmuINT0100968 @ mm9
Intron Retention
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:23534819-23538363:+
Coord C1 exon
chr8:23534819-23534892
Coord A exon
chr8:23534893-23538219
Coord C2 exon
chr8:23538220-23538363
Length
3327 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTTTTCTTTTAATCCCGCAGAAG
3' ss Score
10.74
Exon sequences
Seq C1 exon
GAAATATTTATTCAAGGGGAAAAGACTTTCAATTTTTGCTGATAAGGCGTTTGCTGATGAACCACCTGAACCAG
Seq A exon
GTTTGTTAAGACAAGAACAGCCTTTTCCAAGTAGAGAAGTCGTCTGTCGTTCAGAAAAGGTCCTGCTGTCTTGGCTGTATAACAGCTGGGTATTTGCATTTTACATTTCTTCCTGTCATTGTCCTAGATCTGCTTATGAATAAAACTGCTGATTTGGGTCGTGCTTCCCGCGTTCTGTGGGACCCTGGGGGATCAGTACAGCCAGACGAGCAATCTACGGATTGCCTGCCGCTCTTGGTCAGAAAGAGTTCCTCACTGGCCATTGCAGTATAGCTCACTGCTCTTCATAAAGGTCACTAACCTATGGTGCCTGCTTGTAAGCAAGCAGCTAACTGCCCAGAGTAGGAGAGAGCACACATGTATTTATGAAATTAAATACTCTCTTTTCCTTCTGGTTCATTGGCTGCTTGTCAGTCTTCTGAAAGGCTAACTCTTCATCTCGTTGATTCTTTATATTGTTTTTGTTCGTTTCTGAAATATTAACATCAGCTCTGATTTTGATTATCTCTTCCCATCTGTTTTTGGGATGGTGTTGGTTTTCCAGTGCCTTTGGGTACATCATTAAGTTGTTAGAGACTCAAGACTTTTTGTATAGGTACTTAGTTCTCTATTTCTCTGGACTGGCTTCAGTATGTCCTGTGTTTTTATATGTGTGTCTTCATTATCTGTGGTCAGATAGAATGAAGGATGTCATTCCAGTTTTCCCATATTTTTTGAGATTTGCTTTGTGTCCTGATACAATTTAGGACAGAAACATGAGGTATTTTGAAGAACCTGCTGTTGAGAATGTGTGCTCTTCCGTGTGTGGGTGGGATGCCCTGTAGGTATCTTAGAGGCCCACTTGACTTGGGATGCTGAACTCCAGAGTTTCTTCATTTAGTTTCTTTCTCTACTGGGGAGAGTAGAGCATCGAAATCGCACACCATCTCTGTGTCAGGGTCAGTCTGTGGTTAAGATCTAACTAACGGTCTTTCTGTTATGAAATTGGGTGCTCTTGTGTTTGGCTAGTATATGTTTAAGACTGTAGTAGCCCCCTGGTAGATATTTTCCCCTTTAATGAGTATTACATGTGATGTGACTCATTCATGAAAGATGGTTTATGTTTCAAAAGTAGATAATTGTCTAAAGCATGTAAGATGGTGGTACACAGCCACCATGGGATTGCCCTACTCGTGGGGTTAATGGGTAAATGTATTAATGTGTTCTTAAAACTTTTTCACAGACTAAATGCTCAATACCCATTAGTATTTTTGTTTTATTTCTCTCAACGTGGTCTCCTATAGCTCAGGTTCTCGGTAGTCAAGAATGACCTTGAACTCTGATCTTCCTGCCTCTGTAGGAGGCACAGAGGTTCTTGTGCTCACAGATAAGCACCAGGGAAACCAGGTCTGTTAAACACACTGGGCTGACTTTTCAGAGAGAGGGATGGATATACAACCTCGTTTCTGTAGTGAAGGCTGGGCGTGGAGGTGGGTAATAGCCTGGTCATATTTGTGCTCTGTATGGCTACAGCACCCCAGCTCCTCTCCCAGACCCTACCATGTGCTTGACTTTCCAGCCAATCTATGGAACCTATCTTAATGGAAGACATCTGATGTTGTCAGCCCTTAGAGAATTGTCACATGTACTTTACAGCAAAGAATCTTGATGTAGTCATGTCTTAAGCTCTGTTGTTGTCACCGGATTACGTTATCTCCAGAAAACTTTTCCAGTTTGTGCTGCCCTTAAATATGCCTGAAATAAACTGCTAACTTGAGGTCACTCTGGACCAACCCCAGCCACTGTGTCGTGTGAGATCAGACTTTGTTCTTGCCTCCCACTAACTGACCGTCTGCTGGCCGAGGTGTTCGCACATGCCCTGGCACCTGTCTCCTCAGTGCTGTGCTTACAAACCTTTACCACCGTGACCATCTCTGTCATTATTATTACTGATTTTTTTCTTTTAAATGTTTGTAGGGGAATGGTTCTAACAGCTTTTCATGTACTCCAATGTGGCTTCATCCCCTCTGTAACTGAGGAGACTCCTGCTTCTCCTGACCCCAGCTCTGAAGTGTTAGGGCCACAGATAGTGTCGCCATTGCCATCGCTGGTAACTAATTTAAAATCAAAACCACATATTTTACACACACTCAGCCTGGCACACCAGTAATTCCCTCAGGAGACTAAGGCAGGAGGACCTACACTTCTACAGACAGGCTCTGTTCCAAAAACAAATCAAAACCAAAACATCAAATTCACAAGACCATTCTTAAACTGCCCATTCTTTTCCTTTTTCAATACAGGTGGTAATAATAACCTGGCATGATGTTAGTAAAAACTAAGTGTTGGAAGCCAGGCTGCGGCTCACAAGAAACGGGGTACACATGGGAGGCAAGCAAGGCTGAAAAGAGAGGGGAAACTAGGCGGTCGAGAGACCGAATGGAGCTAAGTTTCCTGATCAAAGCTCAAATGTTTAATGGCAAATGCGTTTATAAAGGGCGGTTGGGGGGGGGGCGGGGATTCCCGCCAATTCATCCTTAGAGCCTGGAAGGAGCTGCAGGTGACGAGCTGCAGGTGACGTGCAGGATAGGGTGTAGTCTCTGGAATTGCTCTTTGGCCTCCCAGCAGGTAGCAGTATGCAGTATCTTGAAGGAGAACAGCAGCAGTGGCTGAACTATAGAGTGATCTAGGGAGGAAGGCTCCACCCTAGGTAATCTCCCAAGTGGCAAAAGGTCAAGGTCTGGCTCAGCCTGCTTCAGGCTGGGGGGAGGTTACAGCTAAGGTTTGCCATTATTATTATTACTATTATTGCCTTTACCTTTCATTTTCGTTGCAATTTTAGCTCTTGGTAGCCTTTCATTATAAATGAATTCTGAATATCAAGATTTGAACATATGTATCAAGATAGAGTTGAGCATAACATCTTTTTAATTTTCTTCATTTACATTTCAAATGCTATCCCGAAAGTCCCCTGTACCCTCCCCCACCCCTGCTCCCCAACCCACCCTCTCCTGCTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATGATCTTCGCAAGACCAAGGGCCTCTCCTCCCAATGATGGCCAACTAAGCCATCTTCGAGCATAACATTTTAAAATTAATTTTCACTACATTTTTATCCACTTTGTTTATGTTAGTATGCACGAGCGTGGGTTTGAGTGTGGAGGTCAGGGGAGACCTTTAAGAGTTTGTTTCTTCTACAGTGTAGGATGCTGGGATGCACGCTTGCGTAGTCGGGCTTGGTGGCCAGCACCTTAACCCACCGAGCTAGTAATTACAGTTTTAAGAAAAATTTACATTTTTTTCTTTTAATCCCGCAG
Seq C2 exon
AAGCATCACCTTCTCTCTGGGAGATAGAGTTTGCTAAGCAGTTAGCCTCGGTAGCTGACCAGCCCTTTGAGAATGGATTTGAGGAGATGATACAGTGGACCAAGGAGGGGAAGCTGTGGGAGTTCCCAGTCAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533-Mrps31:NM_020560:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(8.4=100)
A:
NA
C2:
PF154331=MRP-S31=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: