HsaINT0166925 @ hg19
Intron Retention
Gene
ENSG00000217576 | THSD1P1
Description
thrombospondin, type I, domain containing 1 pseudogene 1 [Source:HGNC Symbol;Acc:31375]
Coordinates
chr13:52749774-52754789:-
Coord C1 exon
chr13:52754717-52754789
Coord A exon
chr13:52749912-52754716
Coord C2 exon
chr13:52749774-52749911
Length
4805 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
ATTTAAAATGCCTTATACAGACA
3' ss Score
3.75
Exon sequences
Seq C1 exon
GAAAAACATATTCAAGGGGAAGAGATGTAATAGTTTTGACGTGACGACAGTTACTAAAGAAGCACCTGAACAG
Seq A exon
GTTTGTTAAGAATAACTGTTTCTCAGGTGGAGAAATATTCCATCTTTACAAGATGTCCTGAAGGTTTTGATGGTGTAATAGTCGGATATTTTAATATTCCCTCCTGTCATTGGCCTGGATCCGAATGATGAATGTGGCGGTTGTTAGAAGGAAAACTCGGGACTATAACGTCCCCCCAAATTGGGAAGGCATCGAGAGACCAAAGAATAATTTGGGCAAGTCCAGCTTGATGAATAGATGAGTTTACTAGAACTTACCTACTGGACATTTCTGGGCAGCTGTAGAGTCACCCTGCCTCTTATCTCTAAGCTGCTTTTAAGCTTATATTCTGGCTGTTTGCCTACTGTGTGTGCACGATGAGACTGTTTTCCTTGATATGTTTTGAGGTATGCCCTGGGATGTTTGGGTTCTCAGGGACACCTGCTCCTCAGCTAGGCACTGTGGCCTTGGCTCCCTGCCCAGCCTTCAGGGTTCAAGCAACACACATACACAGTAACCTGGTGGGGGACATACCACACTACAGTTGTTGAGATTGCTAGTTGTGGTTCAGTTTCCCTCTTGAAATGTTGCATTCTGTGAGATAATGGGAGGTGAGTATTACCGATTACATGAATCCAGAGGTCCAGATTAGCCCCTAATTTGGGTTAGAACATTATTAATCACCTACCATTTGCAGTGTATCTCTATGCTATTACATAAAGACATACTGGTTCCTGTCCCTAGGCAGCTTGCTATCTAGAAGAGGAGATAGCATTTATAAAATAACTTATTGAAGTGATTTAGTGATTGTTCAGGAGATGGGAAGAACATTCAAGGAATATATTTAAGAGACTTGTGTTTTTTTCTTAACACATGGTTGGTCTTTGTTCTCTGTTCTTCCCCTTTTCTTTGGGTAAGAAATTTACCATTTAAGTCTAAAAGAGAAATGAGTGTCCTCTTGCTTGGCATTAAATTTGGTTTACTAGTAAAATAAATGAAGAAACTCAATACAGATGGTCTCCAGAGTGTAAGTGATGAGCATTTCTAATGAATAGAAGTTAGTTTTTTGGACTTTGATAGAAATAATGTTGTATATGCACTTAGGAGGCTGAGATGACAGGATGGCTTGGGATTAGGAGTTCAAGACCAGCCTGGGCAACATAGTGAGATCCTTTCTGTAAAAAAATAGAAAAAAATTATCTGGGTATGGTGGTGCATGCCTATAGTCCTAGCAACCTGGGAGGTTGAGGTGGGAGGATCACTGGAGCCCAGAATTCAATGCTGCAATGAGCTACAATTGTGCCATAACACTCCAGCCTAAGTGACAGAGTGAGACCCCCCCTCAAAGGAGAAAAAAAAATGTTGTACGTGATAGATAAGTTCCTAGGCCAGCCTCCAATGGCTCATTTAATCTTTCTACCAGTTACTTACATGAACTTCTGATTTTCCCCCTATTTAATAAACTATGTTAGAGGCTAGATCTCATTCATGTCTATATACCCTATAGCATCTACTCATGTGGCTTACAGATCATAGGAACTAGTTATCTTAAATCTTAAATTCTTTTTGAAGAAACTGTAGTATAAAATATACATCTATAAAGGAAAGTAGTGAATTCAATTAACGTTTGTTCGTTAGAACTGAAGGTGAAGCTAAAAGAACAACCCCCTGTATTACAAAAACTGCATTCTGTTGTGTATGATAAAAAGGAAATGCAAAATGCATAGGGACAATGAATCACCTCTCCCCTGCTCAAATGGTATCCGTTAAGTGTGCATCAGAAAGGAATTTTTTGTCAGGGCAGCTGCTGTTGTCCAGCCAAAAGAGATACTTGGATTCCGGAAGAAGCCAGCTTACTTTTTAAAATAAAAAAATCTTATTTCTTAAACTGAAATTAGTTGGCAAGGAGGCATTTAAATTTTATGTATTTTATAAAACAGTATCAAATGATTATATTCTAGTGAGGAAAGTAGCACACAAATTTATGTAATAATTTAATGAAGTTACTGTTTGAATGTGCTGTACTTGCATGAGTCTAAAGAATGTTTTTTGTTTCCATTTAAGTACAAGAATAACAAAATGTGGAAACTTAAATTTAGCAGTTGTTCATTGTTGTTATCTTATATCCCAAACAATGCTGGAAATATAGTTGGCATTCAGTAATTTTTTTATTGACCGATTGATTGAGTTATTCTGTTCCATGATTCCCACGTCTTGTTCCCCACTAAATTCTTACCACTGCTACAAAGGATATTGTCATAGGCCCTACTGGTTATCCGAGAGTTGACAGGCAGTATAGCTCAACAGAAACAGTGTTGGTGTTGTGTAGAACTGGATTCAAATTCCGATTCTGCTGCACTAAGCTTTCCCCACCTATAAAATGGGGGTTAGTACATACATCTCCGGGATTAAATGAGGTCATCTGAGAAAAGTGTGAGGCACAGTGCCTGGAACGTAGTACACATTTAATAAATGTTTGCAACTATTAGCAAGTGTAAAATATGATGATCCTGATGATGATGGAAAAGACATAGGTCGGTCAGTGTCCACCAAATAAAAGATAACTGAGATAGTTATTTTATTGGTGTGATTGCTCTGTAAATGTGGCTAGTTAAGCCTAACAACTGTGATAGTTACCCAGTATCAGATGATCTAGGTGAAAATACTTAATTTCTGCCAGTCAGTGTGTGATTAGACACATTTCTGCACATAAAGGCTCACAGAAACCCATTCAGAAAAAGCAAATAGATAAAATAAGGCTTACCCAGGTAGAAGAGTAAATGAGCTATTTGTTGACATGCTTTAGGGGGCTTGACAAAAGTGTGTAAACAGGTAGGCTGGAGGATAAATCATATGCAGTCTATGCCTCTAGCCCAGAAAGGTCAAAAATGTTTGAAAAAATAATTAAGGTCCAAAAATACAGGGAAAAAAGTAGCCAAGGGATAGATATTGATATTCATTTTCCTTTTACAACTTTATTAAGGTGTAATTTGTGTGCAACAAACTGCACACATTTGAAGTATATAACTCGACTAGTTTTGACAAATAGATACACCCACGAAACTCCCACTTATAAATCTGAACATTTTCATGACCCTTAAAAGTTTCCTTATGTCCTTTAGCCTGACACACCCACACATACACACACACACACAAAATGCAGGCAACCTTTGATCTGCTTTCTGTTAAAATAGATTAGGTTGCATCTCTTAGAATTGTACATAAATGAAATCACACAGTATGTACTCTTTTGCATCTGGCTTCTTTCACTCAGCTAATGATTTGAGATTCATCCATGTTGTTCCATGTACTAATAATGCATTTTTATTACTGAATAGTATACAGTTGTATGGCTGTATTACTTTTTTTTTTTTTTTTTTAGACGGAGTCTCGCTCTGTAGCTCAGGCTGAAGTGCAGTGGCGCGATCTCGGTTCACTGCAACCTCCACCTCCTGGGTCCTGGTTGAAGCATTTCTCCTGCCTCAGCCTCCCGAATAGCTGGGCTTACAGGCACACACCACCATGCCCATCTAATTTTTGTATTTCTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGTTCTTGAACTCCTGACCTCATGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCTGCGAGCCACCGCGCCTGGCCAATGTATTACATTTTTGTACCTATTCACCTGTTAGTGGACATTTGGATTGTTTCCCAAATTACACCCCACATTTGGCTATTACAAAGAAAGCTGCCATGAACTTTCGTGTACAAGTCTTTGTGTGGACATGTATTATCTCTTGGGTAAATATCCAGGAATGAAATAGCTATGATGAATAATAGATGTATTTTTAACTTTTTAAGAAGCCATCAAGCTGTTTTCCAAGATGTTTGTACCATTTTACGTTCCCAGCAGCAGTAACTGGTGGGAATATGGCTCATTCTCAAAAGATGATCTGAAATTTCAAAAGTAAAAAAGTTACTGAAACTTGTAATATGATGGTGGTAATTAGCCAACTCATAGGGTTGGTTCTGAGGATTAAATGTACTAATGCATAAAAAACATTTAAGCACAGAGGAAGTACTCAGTGTTCATTAGCAGTTTTATTGTTATTCTGTTGATCTAACTTCTTTGGTTGTTAACAGTAGTACATTAGTGACTAATTTTGATAGAGTTAAAATAAACAGCCTAGAGTTTAAAAATAAGTCACATATTATATAAAAAATATTCATATTCATAAAAATACCTTTAAACAAAATACAAATTTATTTTTTTTTCCAGTAGAAGGGGCAGTGATTACCTGGCATTGTTGTAAAACCAAAGTTAAGCTTGCCATTATTGTAGTTATAGTCTTTATTTATTTATTTATTTTTTGAGACAGAGTCTGGCTCTGTCACCCAGGTCGGAATGCAGTGGCCCGATCTTGGCTTACTGCAACCTCCACCTCCGGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTATGATTATAGGCATGCACCACCGTACCCAGCTAATTTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGTCAGGCTGGTATTGAACTCCTGACCTTAGGTGATCTCCCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCTAGTTATAGTCTTTAACATAATTTTTGTTGCAGTTAAATCTCAGTGATACAACTTTCTATTATATACTGTAATTATGAGTGTCAAGGTATGAAAAATACACAATTCAGAATTGGTTATAACATTTTTTAAAAAGATGTTTACACTGACTTGTTCTTATTTAAAATGCCTTATACAG
Seq C2 exon
ACACATCACCTTCACTTTGGGATGTGGAATTTGCTAAATAAGCCACAGAAAATGAACATCCCTTCAGAATGGGTTTGAAGAGCTGATCCAGTGGATTAAAGAGGGGAAACTGGGAGTTTCCAATTAACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-THSD1P1:NR_002816:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)