DreINT0097909 @ danRer10
Intron Retention
Gene
ENSDARG00000057855 | mrps31
Description
mitochondrial ribosomal protein S31 [Source:ZFIN;Acc:ZDB-GENE-030131-3715]
Coordinates
chr5:23643656-23643952:-
Coord C1 exon
chr5:23643882-23643952
Coord A exon
chr5:23643794-23643881
Coord C2 exon
chr5:23643656-23643793
Length
88 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGTCCTGCTCTGAACATTAGGCC
3' ss Score
5.94
Exon sequences
Seq C1 exon
GAAGAACTCCTTCACTGGCAAGAGGTTAAACATCTTCTCTCCAGGTATGGAGCAAGAATCGTCAGAAATGG
Seq A exon
GTAAGACGTTCCGTTAATGGCATTAAACACATTAGTACTGACATATTTGTGTATGTATTTACTTATTTTGTCCTGCTCTGAACATTAG
Seq C2 exon
GCCCGACCCTTTGGGATATTGATTTAGCGAATCAAATTGTTCAGTCGACAAATCAGATGCCTCGTAATGGCTTTGAGGAGATGATGCAGTGGACCAAAGAGGGCAAACTCTGGCAATACCCAATCAACAATGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057855:ENSDART00000147007:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=NA C2=0.362
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(8.1=100)
A:
NA
C2:
PF154331=MRP-S31=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCACTGGCAAGAGGT
R:
CCCTCTTTGGTCCACTGCATC
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]