GgaINT1018237 @ galGal4
Intron Retention
Gene
ENSGALG00000017033 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
Coordinates
chr1:169838413-169841964:+
Coord C1 exon
chr1:169838413-169838493
Coord A exon
chr1:169838494-169841820
Coord C2 exon
chr1:169841821-169841964
Length
3327 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TAAAAAAACTTCTTATTTAGTAT
3' ss Score
4.06
Exon sequences
Seq C1 exon
TTTATAGAAGTCTTAAAGCAGGAAAAAGGCTTAATATATTCACTAAGGCTTCTCCAGAAACGGAAAACGCACTGAAAACAG
Seq A exon
GTTAGTGGAAATTCAGTGATGAAAAACCCGGTGGAGCCAAGTTGTGAATTTATAGAATATCAAGGGATTCACTGTTGTTAAGGAGCATCGTGACCTGTTCACTTCTGGCTTTCAGATCTGTAAAAAAAAAAAAAATAATAATTTTAATATTACTCTTCTTTTTAGCATCCAAAACATCCATGTTGTATCATGGGCTAGTATTTTCAATACTAATTGGAATGTTCTGTTACTGAGCTTGGGCAACCTGGTCTGGTACCAGATTTGGAGGTTGGTGGCCCTGTCTGTGGTAGGGGGGTTGGAACGTGATGATCGGGGTCCCTTCCAACCTGAGCCATTCTATGGTTCCAAGATTTGAATGGTAAAACGGACTTTTTGTCACTAGATTGGGCTCCTTTTGACAGTATTAAACCACTTTGGAGAATGGATTTGTGGGCTCTGTTGGTGAATTTGTTCCATTTCAAAAGCTTCTTGCATTCATTTAATGGCAAGGAAACTCAAAGCTGTGATCTCAGAGCAAAAAGTTTGCTCTACGGATAGCTAGGCCAGAGCAGAGTGGAAACAAACTATAGACTGAATGTTTGGTTCCTTTGGGGGCTTCTTCCATCTGCTGCTTTGTGTTGAACGATCCTGTAGTACTTGACAGATGCCTTGCTTTACCTGCTGTAGCTCATTCTTTATGTATGTACGCATAAAATACACACCAAATTAAACTCAAAAAGTGGAGAAATGGATACGATCCACCTTTGTATTCACTGAATGACACAGTTGTGCAGGAAAAGCCTCAGTTACTATGTAAGCAGGATGAATTTCACACAAGAAGACTAGCATTGAATTATGACTTAGCTGTACTACAGGCTGAGGGTGTGTGAATGTGGGCAAGTCATTTAAAGTAGTCTCTCACTTACTTTTGCTTTCTGAACAGTGAAACTCCATTACTAGCACTAATCCTTAGTGTATTGATTTCACTAAACTCTCCCGAGGTGCTTTGGAAAAATAGATTGTTGCAGTGTAATGACTTAAAACTGTATATAAAGATAGCACCCATAAAAAAAAGATCATTCCTCTCTGGTGTCTTAGTAAATGGTGCTCATTTCTTTCTGTTTCAAGACTCCAGATCAGTAGTTTTGGGATAAAATAATGAGTTTATTTGGTTTCTCCTGTAAAATGTCAGTCAGTGCTATTTGGGTATTTCCAAACAACTGTGAGCTTTCTGAATGCAGCCATCTCTTTGTTGGACTATGAAAGTTGCTTTTTAAAATGGAATTCAGTTTGCTATTTTTCAAAGAGTTGACTTCTTCAAAATCCATCAGTTTTTCGTATGAAGCCACAATGAATGCTGCAGGATATTCTTTTTGTTTGGTTAAGCTATCTTGACCAAAGGGATGTTCAAGTAACGTTGGAGTTGAAACATTTACTTCAGGTGAAATGATCAGATTTTAGTTATGTATTTTTTTTTGGATGGCACAGTATAGATGCGGTGGCAAATGGTAGTCACACCAAATATGAAATTAAGATGCATAAGTTTTGCTAAAAGTGATGTAAGACAGCAAGTGGGTGTTACCACATTTATATCAGATATAAAGAAATAAGGTTCTTTCAGCTTAGATGACGTTTTCTTCTTTGATTCCAGGTTGCCTTGAGAAAATCTATGGTATCTTCTAAGAGAGAAGGCTTGTTAAATGGTTTACTGACTAAGCTTAATGATCATAAATCAAAAATCTAAATTAATCTCAGGAAATACCAAGATGCTACTTGATGCCTTGTTCCATTGGCTTGCATTTTCACTTTCTTGGCTCATGCTGGTGGAGATCATGAGTTAAAATATTATTTATAGATGACAGAGAAGCAAGTTCTGTGTAAAGTATTGAGTATTTATTTTGAAACACAACCATTAACTTTAAAGTAAGTTGGGGGAAAAAATCAGAACAGAGAATACCAGTATTCTTTTCAATTGCACATGGGTGAAAATACATAATCTTTATTGTAAGCTTGAAAATATGACTTCTCTTCTATTAGAAGATGTGTTAGCACATTATTAGAAGGTATTCTTTAAGATGTAGGCAGTAATTATGGCATTGTTTTCTCATGTTGTCTTTTATCTGTTTCTTACTACCTCTAGCCCTCAAATCAAAGTAGGCAGCTGGGGAATATAGTTCTTAGCAGGAAAATTTGCAGATATAAATTTAAAAGCCATCTTCTGATTTAACACAAAAATGGAAACACTTTTCAGCATGTAAATCACAGAATAAAATACTGTTTGCACTTTTGTTTCTTAAAAAGGAGGGGGAGACTCTTTAATTCAAGTCGTAAATCATTGAGCCAAAGATTAAATTGTGTCTTAGTTTCAAAATTGTGAGTAGTAATATAGTAGCTGGTTGACCATGATCCATTTCAAGTGTAACATTTGAATTCACACCAAGATTTCTGTCCCAGGAAGTTCAGGGTGAATTGACAACCACAGGGGGACGGAGGGTAACAGAATTTAGACCGGTTCATGAAGGTTAACAGCTTGCTCTCTTCATGTTCCCTTCATTTTAGAGATGTGGTTCAGTCTGGGTTCATGACTGATTCTCCTGGGGTAGAGGGGCAGGAACAGTCTGAGAGTAGCTCCTGCTGTATGAGTACACTTGGATTTAAACATAAATAAATCCAAATTTTAGACATCAGAATAGATGCATCCCTAAAGGAACTGCTGGACTTTGGGAGAAGAGTAGAGCATCAGGATTTCTCAAGCCCAAGAGGCAAAAAATTAGGTCTCTTAAGAGGATCAGGAGAGGGGTTGCTGTGGTTTTTAAACAAGAGTTGCCCCTTGAGGGAGAGTATAGTTGTGAAGTGCCTGACAACTCCTTTAAGTAAGCAAGATTGCTTTAGTATAGTATACCAGCCAAGTTCAGAGTTTGTCATGAACACAATTAGTGAAAGACAAAAAGGTGAAAAAAAAATAGTGGGAAAAATCATGCTCTGAGTGACGGACTTAAAAATAAACTGCACTCTGGCAGTTCAGATTTGTTTTCAGTGGACATTTGATCGTAGAGTTAATTTTCATTTCAACAGAGAATTCTCACTGAAGAAAGATGATGCTGGCATCTAAGATAGAAAAGCTTGCACAACTGAAAGTACTAGTCTCTGTAAAGGTCAATGTTAAAGGATATATACATATATATATATATATATGTATGTATACATATACATATATACATATACATATAGTTTTATATATGTATATATATATAGTTTTACATATATATATATATATATATATATAGTTTTAGCCAAGGAGAAATCTTTGGCATACTCATAGATCTTATAAAAAAACTTCTTATTTAG
Seq C2 exon
TATCTTCACCAACAATTTGGGATCTGGAATTTGCAAAGGAGATTGCAGCAGTAACTGAGCAGCCTCCCCGGAATGGTTTTGAGGAGATGATCCAGTGGACAAAAGAAGGAATACTGTGGGAGTTTCCAATTGACAATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017033:ENSGALT00000027520:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(13.6=100)
A:
NA
C2:
PF154331=MRP-S31=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]