HsaEX1024703 @ hg38
Exon Skipping
Gene
ENSG00000109061 | MYH1
Description
myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]
Coordinates
chr17:10513626-10514124:-
Coord C1 exon
chr17:10514010-10514124
Coord A exon
chr17:10513821-10513913
Coord C2 exon
chr17:10513626-10513689
Length
93 bp
Sequences
Splice sites
3' ss Seq
GACTGCTCTTGCCTTTGCAGGGG
3' ss Score
10.67
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CGGAGAATCTGGCGCAGGGAAGACTGTGAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTTACTGGGGAGAAGAAGAAGGAAGAAGTTACTTCTGGCAAAATGCAG
Seq A exon
GGGACTCTGGAAGATCAAATCATCAGTGCCAACCCCCTACTGGAGGCCTTTGGCAACGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq C2 exon
GGTAAATTCATCAGGATCCACTTCGGTACCACAGGGAAACTGGCTTCTGCTGATATTGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=75=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCTGGCGCAGGGAAGA
R:
ATCAGCAGAAGCCAGTTTCCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains