RnoEX0056934 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53745026-53746707:+
Coord C1 exon
chr10:53745026-53745140
Coord A exon
chr10:53745239-53745331
Coord C2 exon
chr10:53746569-53746707
Length
93 bp
Sequences
Splice sites
3' ss Seq
GACTGCTTTTTTCCTTGCAGGGG
3' ss Score
11.18
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
CGGAGAATCTGGGGCTGGGAAGACTGTGAACACGAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTCACTGGGGAGAAGAAGAAGGAGGAAGCACCTTCTGGCAAAATGCAG
Seq A exon
GGGACCCTGGAGGATCAAATCATCAGTGCCAATCCTCTGCTGGAAGCCTTCGGGAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq C2 exon
AGTGCCATTGATATTCTGGGCTTCACTTCTGATGAAAGAGTCTCCATCTATAAGCTCACGGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAGCCGGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-34/41=33-38
Average complexity
C2
Mappability confidence:
95%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.032 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTCACTGGGGAGAAGA
R:
CTCCTCACGTTGCTTCTGCTT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]