HsaEX1024704 @ hg38
Exon Skipping
Gene
ENSG00000109061 | MYH1
Description
myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]
Coordinates
chr17:10516439-10518543:-
Coord C1 exon
chr17:10518520-10518543
Coord A exon
chr17:10518240-10518270
Coord C2 exon
chr17:10516439-10516682
Length
31 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTCTTTTTCTTACAGTTC
3' ss Score
10.9
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGTCTCTCCTCATAAAGCTTCAAG
Seq A exon
TTCTGATCCACTTTAAGGTCGCATCTCTACG
Seq C2 exon
CCAGGGTCCTTAACTGGGCTACCATCAATAACCTGCAGCCATGAGTTCCGACTCTGAGATGGCCATTTTTGGGGAGGCTGCTCCTTTCCTCCGAAAGTCTGAAAGGGAGCGAATTGAAGCCCAGAACAAGCCTTTTGATGCCAAGACATCAGTCTTTGTGGTGGACCCTAAGGAGTCCTTTGTGAAAGCAACAGTGCAGAGCAGGGAAGGGGGGAAGGTGACAGCTAAGACCGAAGCTGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.162
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTCCTCATAAAGCTTCAAG
R:
TTTCGGAGGAAAGGAGCAGCC
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains