RnoEX0056908 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53740841-53742762:+
Coord C1 exon
chr10:53740841-53740862
Coord A exon
chr10:53741112-53741144
Coord C2 exon
chr10:53742519-53742762
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCCCAATTACAGTTC
3' ss Score
9.03
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TCTTTCCTCATAAAGCTTCAAG
Seq A exon
TTCAGACCCACGGTCGAAGTTGCATCCCTAAAG
Seq C2 exon
GCAGACTCTCCCACTGGGCTGCCCCCAATAGCCCGCAGCCATGAGTTCCGACGCCGAGATGGCCGTTTTCGGGGAGGCTGCTCCTTACCTCCGGAAGTCTGAAAAGGAGCGAATCGAGGCTCAGAACAAGCCTTTTGATGCCAAGTCATCCGTGTTTGTGGTGGATGCTAAGGAGTCTTTTGTAAAAGCAACGGTGCAGAGCAGGGAAGGGGGGAAGGTGACAGCCAAGACCGAAGGTGGCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695-'39-47,'39-46,40-47
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]