HsaEX1024711 @ hg38
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8553955-8569812:-
Coord C1 exon
chr17:8569720-8569812
Coord A exon
chr17:8567085-8567278
Coord C2 exon
chr17:8553955-8554018
Length
194 bp
Sequences
Splice sites
3' ss Seq
AAATGTGCCTGTGTCAGTAGGAG
3' ss Score
3.05
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GGGGAACTTGAACGGCAGCTTTTGCAAGCAAATCCAATTCTGGAATCATTTGGAAATGCGAAGACTGTGAAAAATGATAACTCATCTCGTTTT
Seq A exon
GAGGCATGCCTGTGACTTGACTCGTGGGTTTAGAAACGATCTGAGGAAACTGCATTCCTTCAGACTTTCCGTCACTCTCCTGGATCATCCCCATTGAGCCTGAGCCACAACTAAATCTGAAATTTTCCTACTGAAATGCCCTGTGTTTAGTGGCTATATCACAGGAAAGAAGGAACAGTGAGCTGCCAGCTTTG
Seq C2 exon
GGCAAATTTATTCGGATCAACTTTGATGTAACTGGCTATATCGTTGGGGCCAACATTGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(17.6=100)
A:
PF0006316=Myosin_head=PD(1.8=60.0)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
ENST00000360416fB20482
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACTTGAACGGCAGCTTT
R:
ATGTTTCAATGTTGGCCCCAA
Band lengths:
156-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains