HsaEX6020877 @ hg38
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8552046-8569812:-
Coord C1 exon
chr17:8569720-8569812
Coord A exon
chr17:8553955-8554018
Coord C2 exon
chr17:8552046-8552144
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTAATTTATTTTCAGGGC
3' ss Score
10
5' ss Seq
CATGTATCC
5' ss Score
1.38
Exon sequences
Seq C1 exon
GGGGAACTTGAACGGCAGCTTTTGCAAGCAAATCCAATTCTGGAATCATTTGGAAATGCGAAGACTGTGAAAAATGATAACTCATCTCGTTTT
Seq A exon
GGCAAATTTATTCGGATCAACTTTGATGTAACTGGCTATATCGTTGGGGCCAACATTGAAACAT
Seq C2 exon
ACCTTCTGGAAAAGTCTCGTGCTGTTCGTCAAGCAAAAGATGAACGTACTTTTCATATCTTTTACCAGTTGTTATCTGGAGCAGGAGAACACCTAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-'28-23,'28-22,33-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(17.6=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
ENST00000360416fB20482
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACTTGAACGGCAGCTTT
R:
TCTTTTGCTTGACGAACAGCAC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains