HsaEX6020877 @ hg19
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8455364-8473130:-
Coord C1 exon
chr17:8473038-8473130
Coord A exon
chr17:8457273-8457336
Coord C2 exon
chr17:8455364-8455462
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTAATTTATTTTCAGGGC
3' ss Score
10
5' ss Seq
CATGTATCC
5' ss Score
1.38
Exon sequences
Seq C1 exon
GGGGAACTTGAACGGCAGCTTTTGCAAGCAAATCCAATTCTGGAATCATTTGGAAATGCGAAGACTGTGAAAAATGATAACTCATCTCGTTTT
Seq A exon
GGCAAATTTATTCGGATCAACTTTGATGTAACTGGCTATATCGTTGGGGCCAACATTGAAACAT
Seq C2 exon
ACCTTCTGGAAAAGTCTCGTGCTGTTCGTCAAGCAAAAGATGAACGTACTTTTCATATCTTTTACCAGTTGTTATCTGGAGCAGGAGAACACCTAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACTTGAACGGCAGCTTT
R:
TCTTTTGCTTGACGAACAGCAC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)