GgaEX6015804 @ galGal3
Exon Skipping
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1723671-1729702:-
Coord C1 exon
chr18:1729616-1729702
Coord A exon
chr18:1725343-1725406
Coord C2 exon
chr18:1723671-1723769
Length
64 bp
Sequences
Splice sites
3' ss Seq
GAAGTATCTTCTCTTTACAGGGC
3' ss Score
8.87
5' ss Seq
CGTGTATCC
5' ss Score
-2.55
Exon sequences
Seq C1 exon
CTGGAGCGTCAGCTTCTTCAGGCAAATCCCATTCTGGAATCCTTCGGGAACGCGAAGACGGTGAAGAACGACAACTCCTCTCGCTTC
Seq A exon
GGCAAGTTCATTAGGATTAACTTTGATGTTACTGGATATATTGTTGGGGCCAACATTGAGACGT
Seq C2 exon
ACTTGTTGGAGAAGTCTCGTGCTGTTCGCCAAGCTAAAGATGAGAGGACATTTCATATCTTCTACCAGCTGCTGGCTGGAGCAGGAGAGCACCTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCGAAGACGGTGAAGAA
R:
ACTTGAGGTGCTCTCCTGCTC
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]