DreEX6020230 @ danRer10
Exon Skipping
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7443400-7445867:+
Coord C1 exon
chr6:7443400-7443492
Coord A exon
chr6:7444115-7444178
Coord C2 exon
chr6:7445769-7445867
Length
64 bp
Sequences
Splice sites
3' ss Seq
AAAAATCTGTCTTTCCACAGGGC
3' ss Score
10.78
5' ss Seq
CCTGTATCC
5' ss Score
-3.5
Exon sequences
Seq C1 exon
GGAGAGTTGGAGCGTCAACTCCTACAGGCAAATCCTATTCTGGAATCCTTTGGAAATGCCAAAACAGTGAAAAATGACAACTCTTCACGTTTT
Seq A exon
GGCAAGTTCATCCGCATCAACTTTGATGTAACCGGTTACATTGTGGGGGCCAACATTGAAACCT
Seq C2 exon
ATCTTCTTGAAAAGTCCAGGGCCATTCGCCAAGCCAAAGATGAACGCACCTTCCACGTCTTCTACCAGCTGTTGGCCGGTGCTGGAGAACATCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
PF0006316=Myosin_head=FE(3.0=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAACTCCTACAGGCAAA
R:
GTAGAAGACGTGGAAGGTGCG
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]