RnoEX6047853 @ rn6
Exon Skipping
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55338461-55350466:+
Coord C1 exon
chr10:55338461-55338553
Coord A exon
chr10:55349536-55349599
Coord C2 exon
chr10:55350368-55350466
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTCGTGTTCTCTGTTTTCAGGGC
3' ss Score
11.82
5' ss Seq
CATGTATCC
5' ss Score
1.38
Exon sequences
Seq C1 exon
GGGGAACTTGAACGGCAGCTTTTACAAGCAAATCCAATTCTGGAATCATTTGGAAATGCGAAGACTGTGAAAAATGATAACTCATCTCGCTTT
Seq A exon
GGCAAGTTTATCCGGATCAACTTTGATGTAACCGGCTATATTGTTGGGGCCAACATTGAAACAT
Seq C2 exon
ACCTTCTGGAAAAGTCCCGTGCTGTTCGTCAAGCTAAAGATGAACGCACGTTTCATATCTTTTATCAGTTGCTCTCTGGAGCAGGGGAACACCTGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886-'16-10,'16-9,17-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACTTGAACGGCAGCTTT
R:
ACGTGCGTTCATCTTTAGCTTGA
Band lengths:
143-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]