GgaEX6015804 @ galGal4
Exon Skipping
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1736644-1742681:-
Coord C1 exon
chr18:1742589-1742681
Coord A exon
chr18:1738316-1738379
Coord C2 exon
chr18:1736644-1736742
Length
64 bp
Sequences
Splice sites
3' ss Seq
GAAGTATCTTCTCTTTACAGGGC
3' ss Score
8.87
5' ss Seq
CGTGTATCC
5' ss Score
-2.55
Exon sequences
Seq C1 exon
GGGGAGCTGGAGCGTCAGCTTCTTCAGGCAAATCCCATTCTGGAATCCTTCGGGAACGCGAAGACGGTGAAGAACGACAACTCCTCTCGCTTC
Seq A exon
GGCAAGTTCATTAGGATTAACTTTGATGTTACTGGATATATTGTTGGGGCCAACATTGAGACGT
Seq C2 exon
ACTTGTTGGAGAAGTCTCGTGCTGTTCGCCAAGCTAAAGATGAGAGGACATTTCATATCTTCTACCAGCTGCTGGCTGGAGCAGGAGAGCACCTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'19-20,'19-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCGAAGACGGTGAAGAA
R:
ACTTGAGGTGCTCTCCTGCTC
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]