HsaEX1024720 @ hg38
Exon Skipping
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108408280-108410932:-
Coord C1 exon
chr3:108410583-108410932
Coord A exon
chr3:108409090-108409153
Coord C2 exon
chr3:108408280-108408404
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTCATCATATCACATCACAGCCC
3' ss Score
4.59
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
GAAGGAACTGGCAATTAGATTGCAGGAGGCAGCCGAAGCCATGGGGGTGGCCAATGCCAGAAATGCCTCCTTGGAGAGAGCCAGGCACCAGCTGCAGCTGGAGCTCGGGGACGCCCTGTCTGACCTCGGGAAGGTCCGCTCTGCAGCAGCCAGGCTGGACCAGAAGCAGCTGCAGTCTGGCAAGGCCCTTGCCGACTGGAAGCAGAAGCACGAGGAGTCCCAGGCGTTGCTGGATGCCTCTCAGAAGGAAGTTCAGGCTCTCAGTACAGAGCTCCTCAAGCTCAAGAACACCTATGAGGAGAGCATCGTGGGCCAGGAGACACTCAGGAGGGAGAACAAGAACCTCCAAG
Seq A exon
CCCAGGATCTCAGAACCAGAGGAGCAGGTGACCTATTGAGCTCCTTCCACCACCTCTGAACTGG
Seq C2 exon
AAGAGATTTCTAATCTGACAAACCAGGTTAGAGAAGGGACCAAGAACTTAACTGAAATGGAAAAGGTCAAGAAACTAATTGAAGAAGAGAAGACAGAAGTCCAGGTGACACTGGAAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.263 C2=0.542
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100)
A:
PF0157614=Myosin_tail_1=PD(1.3=30.0)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
ENST00000273353fB20490
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGACACTCAGGAGGGAG
R:
TCACCTGGACTTCTGTCTTCTCT
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains