HsaEX1024739 @ hg38
Exon Skipping
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34988092-34989919:+
Coord C1 exon
chr20:34988092-34988262
Coord A exon
chr20:34989324-34989367
Coord C2 exon
chr20:34989740-34989919
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTCATCTTCCCACTCTGCAGGTT
3' ss Score
9.71
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TTCAACAGCTTCGAACAGCTGTGCATCAACTTCACCAATGAGAAATTGCAGCAGTTCTTCAACCAGCACATGTTTGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGCATCGACCTCATCGAGAAG
Seq A exon
GTTAGAAGACTGAGGCTTAGTGATGTCGGAGGGCCCCACAGCTA
Seq C2 exon
CCACTGGGCATCCTGTCCATCCTGGAGGAGGAATGCATGTTCCCCAAGGCCTCAGACGCCAGCTTCCGGGCCAAGCTCTACGACAACCACGCGGGGAAGTCACCCAATTTCCAGCAGCCTCGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.261
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.5=100)
A:
PF0006316=Myosin_head=PD(0.9=26.7)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
ENST00000262873fB20493
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTGCATCGACCTCATC
R:
GCTGCTGGAAATTGGGTGACT
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains