HsaINT0107885 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34988092-34989919:+
Coord C1 exon
chr20:34988092-34988262
Coord A exon
chr20:34988263-34989739
Coord C2 exon
chr20:34989740-34989919
Length
1477 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CAAGCTCGTTCTGTTCCCAGCCA
3' ss Score
5.56
Exon sequences
Seq C1 exon
TTCAACAGCTTCGAACAGCTGTGCATCAACTTCACCAATGAGAAATTGCAGCAGTTCTTCAACCAGCACATGTTTGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGCATCGACCTCATCGAGAAG
Seq A exon
GTGGGTGCCGCGGCAAGGTCACTTTGAGGAAGGGAGGGTGTGTGTGGTGAGCAAGCAGGGATGGATGACCATGGCTTGCATGGAAGCCTGCAAGTGTGCATGGAAGCGTGTGACTGTGCGTTGCAGTAAGCATGCATGTGAGTGTAGTTGTGACAGCGTTTATGTGCTTGTGTGTGAAAGGGCACGTGTGTGAGTGGGTGTGTTGGAGTTGACCATGAGTGAGCCTTGGTGAGTGTGTGAGCAGTGTGAATGCATGCATCCCAGTACTGTGGACAACAGCTCCTCCTGGGTGCTCAGAATTCTGCAGCTCACAAGGCCCTATTTGCAGCCACAATTTCACTGGATCCCTAGAACTGCCCTGGGTGCAGGGCAGGGTGTGTTTCCTTGTTTTTGTGATTGTGGAACATTATGTATATTTACCCATTGTACAAAGAATGGAAGAAAGAAAATTTGAAAAATTGGCAGGGGAAAAAATGTTTCTCCCCATTCCTATCACAGCCAGTCACATGACACTTAGGTTCATTTCCTCGAAATCCTTTATCCCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAATGGCACCATCTCAGCTCACTGCAACCTTCGCCTCCAGGGTTCAAGCAATTCTTATGCCTCAACCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCACACCTAGCTAATTTTTGTATTTTTAATAGAGACATGGCTTCACCATTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTACCCACCTTGGCCTCCTAAAGTGCTGGGATTACAGGCGTGGGCCACTGCGCCTGGCCTATCCATTTTCTTTTATAGACACAGATTTCATTTCATATCCTACTTTTTCTCTGAAAATGTATTTTGAATGCTGCTCATGGCAAGAGTAGTTCATGCAGTGGATGAGTTTCATACGATGCATTTCTGCAGTCCCCTACAGCTGGGCGTTTAGGTGATTGACAGCTTTTTAAATATTATGTCAGCACTGAAGACATTCATCTTCCCACTCTGCAGGTTAGAAGACTGAGGCTTAGTGATGTCGGAGGGCCCCACAGCTAGTGAGTGAGGAAGCCAAAATGTGAACTTGATGGCTTTTTTTGACTTACCCCATGTTTGTGTGTGACAGCCATGGCTGTGGCGGGGGTGAGAGTGGGTACAGAGATGCCAGCTTGGGTTTGCCATTGTTAGAAGTGAAGATGACACCTCAGTGCTGCAGATTTTGCAGGAGGGGACTGGAGCCAAGCCACAAACTTTTCTCTGTTAGGAGATGGGTTCTTGGAGTGGGTGTGGTGTCTGACCATCCGGGGAGATGGCTGAAGCTGGGGATCTGGGAAGGCTCCCAGAAGGGAGGTGGCCTGGGGAACCAGGGGTTCAGTCCTTCCAGGATGGACTGGCTTGATGGTGGCTTTTCAAGCTCGTTCTGTTCCCAG
Seq C2 exon
CCACTGGGCATCCTGTCCATCCTGGAGGAGGAATGCATGTTCCCCAAGGCCTCAGACGCCAGCTTCCGGGCCAAGCTCTACGACAACCACGCGGGGAAGTCACCCAATTTCCAGCAGCCTCGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAACAGCTGTGCATCA
R:
CGCCTGCGTAGTGGACCA
Band lengths:
342-1819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development