GgaINT0132868 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:15560-16163:+
Coord C1 exon
chr19:15560-15730
Coord A exon
chr19:15731-15853
Coord C2 exon
chr19:15854-16163
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CAAGGTCCTCTCCTCCGCAGCCC
3' ss Score
8.07
Exon sequences
Seq C1 exon
TTCAACAGCTTTGAGCAGCTCTGTATCAACTTCACCAATGAGAAGCTGCAGCAGTTCTTCAATCACCACATGTTTGTGCTGGAGCAGGAAGAGTACAAGAAGGAGGGAATCGAGTGGGAATTCATTGATTTTGGCATGGACCTCCAGGCCTGCATTGATCTCATCGAGAAG
Seq A exon
GTACTGACTCTCCCAGGGCGTTTTGGGGTGCTTTTCCACTTGGAGCTTGCCAGGGACCCCAAAAGTGGTCACTTGGGTGGTACTTGGTGTACTCCATGACCAACAAGGTCCTCTCCTCCGCAG
Seq C2 exon
CCCATGGGGATCATGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAAGCTTCAGACATGACCTTCAAGGCCAAACTGTTTGACAACCACTTGGGCAAATCAGCCAATTTTGGGAAACCCCGGAATGTCAAAGGGAAGTCAGAAGCCCACTTCTCACTCATCCACTACGCGGGCACAGTGGATTACAATATCATTGGTTGGTTGGAGAAGAACAAGGATCCCCTCAATGAGACAGTGGTGGGGCTCTACCAGAAGTCAGCCCTCAAGCTATTGGCCAGTCTCTTCTCCAACTATGCTGGGGCAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAATGAGAAGCTGCAGC
R:
GCTGATTTGCCCAAGTGGTTG
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]