MmuINT0103534 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55577287-55578808:-
Coord C1 exon
chr14:55578638-55578808
Coord A exon
chr14:55577597-55578637
Coord C2 exon
chr14:55577287-55577596
Length
1041 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTTGCTCTATGCTGTCAGCCC
3' ss Score
4.16
Exon sequences
Seq C1 exon
TTCAACAGCTTTGAGCAGCTGTGCATCAACTTCACCAATGAGAAGCTGCAGCAGTTCTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAGGGCATTGAGTGGGAGTTTATCGACTTCGGCATGGACCTGCAGGCCTGCATCGACCTCATCGAGAAG
Seq A exon
GTGAGCCCTGCCTCCACCATCTAAGCTCCCTTCTCTGCCAACCCCAAAACAGTCATTCCATCTCTTCTACCCTCAGGAGACCAGACTCCCCAGACTCCCAAATTGCTCCCCAGTCCCAGCTTCTCGCACTGTGAGGTCACAAGCACCCACAGCTGCTCTCTTCTCACCTCAAACCTTGAGTCTTGTTCCATTCTGTGATGGTCACCTCCCAGTGACTCCTGACCCTTCTCTACCACATGAGAAACATCAATCATGGAAAAATCCTGGACTCAAACAGGAAGTGTTTGTTTTGTATCCTTCCTGTTTGCTGAGAAATAACCAATTCTCAGCCCATCTCCACAGGAGAGGAATGGTGTCCCTGTGGCGTAATGATGGCCTGCAGTGTGCCTTGCCTTTTGCTGCAGGCCAGAACCCAAGTGTCTGACCTGCATGCAGTCAGTCACCGTTCACCGAAAAGGGACCTTCCCATAAGCTGAGTCACTACTTGACTTCTAGACCCAAGTTCTCATCTCCCTGACACCACAGAATCCCTAAGGTTTGGGGAAGGAATATATGCATCTTCCTGGGGGGGAGGGAGAGGGGGAAATGGTCTCCAGCTTTACCAAATCCTCAAAAGAATTCTAGCCCTGAGAAAAACTAAGAATTCCATACTCTGAAGGCAAAAGTGCTTTTCAGAACTAGGATCCACCCAGCCAACCCTTAACTGGCGGCTGACATCAGCCAAGTTCTGTGGACATGCATCTGTCCCTCGCCTGAAAAAGAAGGATTTTTCCCTCTGCAGGCTTTAAAGGGAGTGACTAGGAACACATAGCTACTTGGCTACTGGGGCAAAAGAAAAAAATATATGGGGTAACTCCAGATGTAACTGGATTTAAGGTAACTAAGAATATTGTCATCCTATCTTGGGCCAAGAGGTTCTGCCCAGGCAACCTTTGACCCTTCAGCAGTGCAGGTCTGTAGAGCCTTCTTGTCAGAGTGTGGGAGTCCTGGAAGTTAGGAATGTAACTACTCATCATTTCTCTCCTTGCTCTATGCTGTCAG
Seq C2 exon
CCCATGGGCATCATGTCCATCCTCGAGGAGGAGTGCATGTTCCCCAAGGCCTCAGACATGACCTTCAAGGCCAAGCTGTATGACAACCACCTGGGCAAATCCAACAACTTCCAGAAGCCTCGCAATGTCAAGGGGAAGCAGGAAGCCCACTTCTCCTTGGTCCACTATGCTGGCACCGTGGACTACAACATTATGGGCTGGCTGGAAAAGAACAAGGACCCACTCAATGAGACGGTGGTGGGTTTGTACCAGAAGTCCTCCCTCAAGCTCATGGCTACACTCTTCTCTACCTATGCTTCTGCTGATACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAATGAGAAGCTGCAGC
R:
CCAGCCAGCCCATAATGTTGT
Band lengths:
345-1386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: