GgaINT0132868 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:10858-11461:+
Coord C1 exon
chr19:10858-11028
Coord A exon
chr19:11029-11151
Coord C2 exon
chr19:11152-11461
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CAAGGTCCTCTCCTCCGCAGCCC
3' ss Score
8.07
Exon sequences
Seq C1 exon
TTCAACAGCTTTGAGCAGCTCTGTATCAACTTCACCAATGAGAAGCTGCAGCAGTTCTTCAATCACCACATGTTTGTGCTGGAGCAGGAAGAGTACAAGAAGGAGGGAATCGAGTGGGAATTCATTGATTTTGGCATGGACCTCCAGGCCTGCATTGATCTCATCGAGAAG
Seq A exon
GTACTGACTCTCCCAGGGCGTTTTGGGGTGCTTTTCCACTTGGAGCTTGCCAGGGACCCCAAAAGTGGTCACTTGGGTGGTACTTGGTGTACTCCATGACCAACAAGGTCCTCTCCTCCGCAG
Seq C2 exon
CCCATGGGGATCATGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAAGCTTCAGACATGACCTTCAAGGCCAAACTGTTTGACAACCACTTGGGCAAATCAGCCAATTTTGGGAAACCCCGGAATGTCAAAGGGAAGTCAGAAGCCCACTTCTCACTCATCCACTACGCGGGCACAGTGGATTACAATATCATTGGTTGGTTGGAGAAGAACAAGGATCCCCTCAATGAGACAGTGGTGGGGCTCTACCAGAAGTCAGCCCTCAAGCTATTGGCCAGTCTCTTCTCCAACTATGCTGGGGCAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAATGAGAAGCTGCAGC
R:
GCTGATTTGCCCAAGTGGTTG
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]