HsaINT0107885 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33575895-33577722:+
Coord C1 exon
chr20:33575895-33576065
Coord A exon
chr20:33576066-33577542
Coord C2 exon
chr20:33577543-33577722
Length
1477 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CAAGCTCGTTCTGTTCCCAGCCA
3' ss Score
5.56
Exon sequences
Seq C1 exon
TTCAACAGCTTCGAACAGCTGTGCATCAACTTCACCAATGAGAAATTGCAGCAGTTCTTCAACCAGCACATGTTTGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGCATCGACCTCATCGAGAAG
Seq A exon
GTGGGTGCCGCGGCAAGGTCACTTTGAGGAAGGGAGGGTGTGTGTGGTGAGCAAGCAGGGATGGATGACCATGGCTTGCATGGAAGCCTGCAAGTGTGCATGGAAGCGTGTGACTGTGCGTTGCAGTAAGCATGCATGTGAGTGTAGTTGTGACAGCGTTTATGTGCTTGTGTGTGAAAGGGCACGTGTGTGAGTGGGTGTGTTGGAGTTGACCATGAGTGAGCCTTGGTGAGTGTGTGAGCAGTGTGAATGCATGCATCCCAGTACTGTGGACAACAGCTCCTCCTGGGTGCTCAGAATTCTGCAGCTCACAAGGCCCTATTTGCAGCCACAATTTCACTGGATCCCTAGAACTGCCCTGGGTGCAGGGCAGGGTGTGTTTCCTTGTTTTTGTGATTGTGGAACATTATGTATATTTACCCATTGTACAAAGAATGGAAGAAAGAAAATTTGAAAAATTGGCAGGGGAAAAAATGTTTCTCCCCATTCCTATCACAGCCAGTCACATGACACTTAGGTTCATTTCCTCGAAATCCTTTATCCCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAATGGCACCATCTCAGCTCACTGCAACCTTCGCCTCCAGGGTTCAAGCAATTCTTATGCCTCAACCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCACACCTAGCTAATTTTTGTATTTTTAATAGAGACATGGCTTCACCATTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTACCCACCTTGGCCTCCTAAAGTGCTGGGATTACAGGCGTGGGCCACTGCGCCTGGCCTATCCATTTTCTTTTATAGACACAGATTTCATTTCATATCCTACTTTTTCTCTGAAAATGTATTTTGAATGCTGCTCATGGCAAGAGTAGTTCATGCAGTGGATGAGTTTCATACGATGCATTTCTGCAGTCCCCTACAGCTGGGCGTTTAGGTGATTGACAGCTTTTTAAATATTATGTCAGCACTGAAGACATTCATCTTCCCACTCTGCAGGTTAGAAGACTGAGGCTTAGTGATGTCGGAGGGCCCCACAGCTAGTGAGTGAGGAAGCCAAAATGTGAACTTGATGGCTTTTTTTGACTTACCCCATGTTTGTGTGTGACAGCCATGGCTGTGGCGGGGGTGAGAGTGGGTACAGAGATGCCAGCTTGGGTTTGCCATTGTTAGAAGTGAAGATGACACCTCAGTGCTGCAGATTTTGCAGGAGGGGACTGGAGCCAAGCCACAAACTTTTCTCTGTTAGGAGATGGGTTCTTGGAGTGGGTGTGGTGTCTGACCATCCGGGGAGATGGCTGAAGCTGGGGATCTGGGAAGGCTCCCAGAAGGGAGGTGGCCTGGGGAACCAGGGGTTCAGTCCTTCCAGGATGGACTGGCTTGATGGTGGCTTTTCAAGCTCGTTCTGTTCCCAG
Seq C2 exon
CCACTGGGCATCCTGTCCATCCTGGAGGAGGAATGCATGTTCCCCAAGGCCTCAGACGCCAGCTTCCGGGCCAAGCTCTACGACAACCACGCGGGGAAGTCACCCAATTTCCAGCAGCCTCGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAACAGCTGTGCATCA
R:
CGCCTGCGTAGTGGACCA
Band lengths:
342-1819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)