RnoINT0096554 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151136136-151138333:+
Coord C1 exon
chr3:151136136-151136306
Coord A exon
chr3:151136307-151138153
Coord C2 exon
chr3:151138154-151138333
Length
1847 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
AATCTTGCTTCCTGTTCCAGCCT
3' ss Score
7.43
Exon sequences
Seq C1 exon
TTTAACAGCTTCGAGCAACTGTGTATCAACTTCACCAACGAGAAACTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAACGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
Seq A exon
GTCAGGCCTAAAGTGGGGATGGTGCCGGAAGTTGCGCATGCGTGCGTGCGTGCGTGAGTGCGTGAGTGGGTGGGTGGGTGCAGGCCTGTATGTATCAGCTGTGTATCAATGTGTGGTTGTGACTGAAGTGAGTGTGAAAGTATAAATGTGGCTGCGTGGCTGTGCACATGGGTGTGCTGGAGACATTTGGGTATAGGCGAATAGTGTCATGAGGCAGGTAAGAGGGCCAGTGCTATGGGCAGCTCTGCCATTCACCAGGTCCTTGTGCAGAACTGACTCGAGGACTACGTGCATTGGATTCTAACACATTGCATATGCTTCCCCACTGCACGGAGAATGGAAAAAGAAATTGGAAACACTGGAAATAAAGAGGGGGGCTCCCTCTGAGCCTCCCACAGCCTGTGGCTTAGCCTCGAACTAGTTCACCCCAGATGTTTGGCCCCAGGCATGTGTGTTTCTTTTTTGTAATCACTACATGTATCTATTTGCTTTGTGGATTGACATGTTGGTAAGCATGAATCATGGCATGTGTGGGGTCAAGGGACAATTCAGGAGTCATTTTTCTCCTTCTGCCTCATGGGTCCTGGGGATGGAAGTCAGGTTGTCAGGCTTAGTGACATGTGTCTTTTCCCACCCAATCATCTTGCCAGTCCAGTACGTATGGTTTTTATGGATACAGTCCTAATTTGTAGCATGTTTTCCCTCTGAACATGCATTTTTAATGCTGTGGAAAAGCCAGACTGGACCATGCAGCAGGCGACTCTCAGCCTCTGACTGCTGGGCACTTAGGTGGTTGATTTTTTTGTCTACGAAATAAGCATTGGAGTGAATCATTATTGCCATTTGGTTGAGAAGTGAAGGTTTGGGGCTGGAGAGGTGGCTCAGTAGTTAGAGCACCGACCACTCTAGAAGATCTGGTCAGTTCCTCGCACTCACAACAGGCAAATCATAGCTGCAAGTAACCCTAGTTTCCAGGTATCCAATTTTTTCTGGCCTCCATGGGCACATAAACTCATGCAGGCATATATGTACACATACACATACACATATACAATACATATGCATATACCTATACATATACATATAACATATATGCATACACATATACAATACATATGCATATACTTATACATATACATATAACATATACATATGCACACACATATACTTATACATACACATGTACATATACTTATACATATACATATAACATATACATATGCACACACATATACATATACTATACATATACATAACACATACACATATACTTATACATACACATGTACATATTTATACATATACATACACATACACATATACATATACAATACATATACATATAGCATACACATACATATATACATACACATACAAGTAAACACTTGTTAAAACAAGAAACATAGATTTAGTAAAATGCATGATCCCTGTTTCTAATGAGTGTAGACTCAATTAGCTTTAAAAAAAAGTGTGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAGTGTGTACATGTGAGCCACCGATGCTAGTTAATAGGGCACAGAGATGCCAGTCTGTCCTATACACATAGGAAGGGAAGGGGATTGGAAGTCAAGCCACAAACTCTTCTCTCCTAGAAGGTGGGTTCCTGTGTATACACACATGACTGAGTTCTCCTGTGTATGGCTGGCTTATGGATCTGAAACAGCTCCCAGAAGGAGTTAGACTGGAGAACAAAAGTCTAAGGGCCCAGCCAGTATGGTCTAGCCTGGCCCTTCAATCTTGCTTCCTGTTCCAG
Seq C2 exon
CCTCTGGGCATTCTGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCTTCAGACGCAAGCTTCAGGGCCAAGCTCTATGACAATCACTCTGGGAAGTCACCTAATTTCCAGCAGCCTCGCCCAGACAAGAAACGCAAGTACCAGGCTCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAGCAACTGTGTATCA
R:
CGCCTGCGTAGTGGACCA
Band lengths:
342-2189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]