BtaINT0097358 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64898530-64900008:+
Coord C1 exon
chr13:64898530-64898700
Coord A exon
chr13:64898701-64899828
Coord C2 exon
chr13:64899829-64900008
Length
1128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CCCTTGTGCCCTGTCCCCAGCCG
3' ss Score
9.37
Exon sequences
Seq C1 exon
TTTAACAGCTTCGAACAGCTGTGTATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTGGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
Seq A exon
GTGGGGCCCAGGGCCAGGTCACTCTGGCAAGGGAGTGCCTGTGTGCTTGTGTGTGAACGAGCGTGTGCAGGCATGCATGTGCGTGTGCATTGAAGTGAGCGTGTGTATACGAGCATGACTGTGAGCGTGTGTGTGTGATGTGTATATGAATGGAAATGTGTGCGGGTGTGTGACTAGGTGTGTTGGAGATTGAGTGCGATCGTGTGTTGGTGAGCAGGGCATGTGTGTGAGCGTGCGTCCCTGTTGCACTGCTGACAGTAAGCCCTATTGCAGACACAGTTTCACTGGACCCTCAAAACTGTCCAGAACTACAGGGCAGGGTAGGGTGTGTTTGTTTATTTGCTTTATAAAACATTACACCTATTTCCCTATGGTACAAAGACTAGAAGGAAAGAAAAATCAAAGAAAAATGGAAAAATCAGAAATAAAGGGGAAAGAATATTTCCCCCAATCCTACCACGACGTGCATCCTCTCCATCCTTTATCCTCGGCATCTCTTTTCTCTAACGGACACAGACTCACTTCTCATCCTACCTTTTCTCTAAAAGTGTATTCTGGGCGTGGTGCTTTGTTGAAGAAGGCACAGTGGTTCACACAGCAGATGATGCCCATGCGTTTCTATAATCTCCTACCTATGCACATTCAGTTGGTCGACAGTTCTTTGCTGTTATGGCAGGAATGAAAGTATTCATGTCCCCATTTTGCAGGTTAGAAAACTGAGGCTTAGAGAGGTCTAAGGGCCCTTTAACCACTAAGTGAGGAAGCCAGAGTTTGACATCAACTGCGTTTTTTGACAGCACCATGTGGGAGAGTGTGAGACCACAGATGTCGGGGGTGTGTGGGTGCAGGGGTGCTGGTTTGAATTTGCACACTTATAAGCAAAGAGAACAACTCAGGGCCAGCTGCAAATTGGTCAGAAGCGGGTTGAAAGCCAAGCCACAAACTTTCTTTCTTAGAAGACAGGGCTCCTGGGTGCAGATCCATTCTGCCTCCCTCTGGGCAGATGGTGGCTGAGGTTGGGGGGTCTGGGGAAGCTCCCAGAGAGTGGGGCTCCAGGAAGTGGAAGTCCAGCCCAGCATGGATGGACTGGCTTGATGGAGACCCTTCACCCTTGTGCCCTGTCCCCAG
Seq C2 exon
CCGCTGGGCATTCTGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCCTCGGATGCCAGCTTCCGGGCCAAGCTCTATGATAACCACGCGGGGAAGTCGCCCAATTTCCAGCAGCCACGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTTGAGGTGGTCCACTATGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAACAGCTGTGTATCA
R:
CGCCTGCATAGTGGACCAC
Band lengths:
342-1470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development