DreINT0099917 @ danRer10
Intron Retention
Gene
ENSDARG00000035322 | myh7bb
Description
myosin, heavy chain 7B, cardiac muscle, beta b [Source:ZFIN;Acc:ZDB-GENE-090311-5]
Coordinates
chr23:18803889-18804322:+
Coord C1 exon
chr23:18803889-18804059
Coord A exon
chr23:18804060-18804142
Coord C2 exon
chr23:18804143-18804322
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAT
5' ss Score
4.19
3' ss Seq
CCCTCTTGCTTTGTTTGCAGCCA
3' ss Score
9.82
Exon sequences
Seq C1 exon
TTCAACAACTTTGAGCAGATGTGTATCAACTTCACCAATGAAAAACTGCAACAGTTTTTCAACCATCACATGTTTATCCTCGAGCAAGAAGAGTACAAAACAGAGGGCATTGAATGGACTTTCATAGACTTCGGATTAGACCTGCAGGCCTGCATTGACCTCATTGAGAAG
Seq A exon
GTTGATATATATAGAATGACATATAATGATTTGAAAGCATGTAAGTAAACCTAGCCGTAACATCCCTCTTGCTTTGTTTGCAG
Seq C2 exon
CCATTGGGAATACTGTCTATTCTGGAGGAGGAGTGCATGTTCCCTAAAGCCACGGAGAGCAGCTTCAAAGCGAAACTCTATGATAATCTCCTCGGCAAGTCTCCCAATTTCCTGAAACCGAGGCCAGACAAAAAACGCAAATACGACACACACTTTGAGCTGGTGCATTACGCTGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035322:ENSDART00000137438:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGATTAGACCTGCAGGC
R:
TTTGTCTGGCCTCGGTTTCAG
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]