GgaINT0010706 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2600556-2601615:-
Coord C1 exon
chr20:2601445-2601615
Coord A exon
chr20:2600736-2601444
Coord C2 exon
chr20:2600556-2600735
Length
709 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ATGCCACCGTTTCTCTGCAGCCT
3' ss Score
8.11
Exon sequences
Seq C1 exon
TTCAACAGCTTTGAACAACTGTGCATCAACTTTACTAATGAGAAGTTGCAGCAGTTCTTCAACCACCACATGTTTGTCCTGGAGCAAGAAGAATACAAGAAGGAAGGCATCGAATGGGTCTTCATTGACTTTGGCCTGGACCTACAGGCTTGCATTGACCTGATTGAGAAG
Seq A exon
GTAAAGCATGAACCAGGACACAGAATTGGTACTTCTGGTAGACAGCTTGTTTGCAAGGACTGGAACAATGAGAGGTACTCTGCTACCAGAAATAGAATTAGTCTCTCCCCAGTCAGTGGCAACTGGACAACTTCATTTTCCCCACATCTGTAGCTCAGAACCTTCAGCTCATTGATTGGACCTTTTTTTGACACAAATTTTGTCTTTGTAAAGCTAGGGGAATTCTGTTCCTACTCTCCCGTGAGCAATGGAACCTGGAGATGGGGGTGAGAGTGTAAAATGGAGGGGACAGAGAATTTTTGCTCTACAGAACGGTGATCTCTCATTGATTCTGAGAACTTCTTGTAAAAGATTTCCACAATTTCATGGAGGAAACCCTATCTTTTTCCTTTTTGGAAAGGAGCATACCTGTCAGGATACTGGAGAGGACCACCCCTCTCCTGGCAATAGACCACATCTGGGCAAGACCAGTGTCTTGTAGGCCTGGCCAGTCCCACTCTCACTGGGTGGAAGAAACAGCCTGGGGTACACCAGGGGAGCAAGGAGAGTTTGCCCCATGGTGGATGTCTTGCACTATTTGCCTGAATGAGGACATGACCTCCCAGGTCAGGGCTTGCCTCACCTTGCCCAGTAGCACAGAGTCCCCTATTCTGGGATGGCACATGGCAAGAATTGAATCAGATTTCCTCATGCCACCGTTTCTCTGCAG
Seq C2 exon
CCTCTGGGAATCCTGTCCATCCTCGAAGAGGAGTGCATGTTCCCAAAAGCCTCCGACATGTCATTTAAAGCTAAGCTCTATGACAACCACCTTGGGAAGTCACCCAACTTCCAGAAACCCCGGCCAGATAAGAAGCGGAAATATGAGGCTCACTTTGAGCTGGTGCACTATGCTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGCTTTGAACAACTGTGCA
R:
GCATAGTGCACCAGCTCAAAG
Band lengths:
342-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]