HsaEX1025931 @ hg38
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:168846851-168851006:+
Coord C1 exon
chr2:168846851-168846951
Coord A exon
chr2:168848071-168848111
Coord C2 exon
chr2:168850836-168851006
Length
41 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTCTTGCTCATAGGCT
3' ss Score
10.04
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTAGTCCCACTCTAGATGAGACGAATGACAACTCATTACATAAAATGGACGCCTCAGGACAGTAGGGCTTCATTCTTTCCTAGGACTCTGTTGAAAAAG
Seq A exon
GCTAAAACAGAAGAGCTGATTTCTAGATCTTTTTCTATAGG
Seq C2 exon
GTAACCCACAGCATCTGCCTATATGCCTTTTGGGTCAAAAGAGCCTGGGGAAAGTGTGTGAGTGATTTAAGATACCAAGACACATTCCTTCCTGGAAATCTCCCTCCACTATGGTTTGGATATGACATAGTCAAGAGGCTAATCATGAGACTTTGTTCAGTCTGTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-'30-48,'30-47,31-48
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000458381fB21278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGACAGTAGGGCTTCA
R:
CCAGGAAGGAATGTGTCTTGGT
Band lengths:
143-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains