HsaEX1026284 @ hg38
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr19:48661407-48663543:-
Coord C1 exon
chr19:48663463-48663543
Coord A exon
chr19:48662500-48663226
Coord C2 exon
chr19:48661407-48662041
Length
727 bp
Sequences
Splice sites
3' ss Seq
CCATGTTCTTCGGCTTACAGAGT
3' ss Score
6.96
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
ACCCTCAGTGTCAAAACTACTGCAATATGTCGGACACCAGGGTACACATGAGCCTTCGGAGGTACTGCCAGCAGGACCATG
Seq A exon
AGTTTCATCATCTCCTTCAGCCTGACATCTCTGAGGGATGGAAGAGATAGGGGAACTGGTTGAGTGGAATGAACTCTTGCCCTGTCCTCCCTATCTCAGAGACCCTTTCTGCTTCCCTTCATGGTCCCAGATATTTGAGCCTTAGCCCCACTTCCCATAAAGACTTGTCCCACGGTTCCCTAATCCCCAGTCCACACCTGCTCCATGACCTTGGGGTCTATGACCTCAGGCTATTCAGCTCTCTTAAGACACTCAGGAGTTCGGCCCAGCCAACAAATCTAGACCAACGCCAGCTATTTCTCTCAATGTATAGGACCGCAGACTTCTCCCTCAGGAACCTCATCTGGTCACTAGTGTTCTAGGCCTTCACAGGTGGAAAGATTTTCCCCACCTTCCACAGGGATCTCCTGCCCCGCAGACCCAGCTGGCTAGTCAGAGTCCCACCCAGCCTCTCAGAAAGTGCATTTTTCTGGCCGGGCGCGGTGGCTCATGCTAATAATCCCAGCACTTTGTGGGGGCCGAGGTGGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACTCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCAGGATCCTGTAAACCCAGCTGAGGCACAAGAATCACTTCAACCTGGGAGGCAGAGGCTGCAGTGAGTTGAGATCACACCACTGCACTCCAGACTGGGCAATAGA
Seq C2 exon
TTCTCCGCGCGCAGGTGCTAGCGTCCGAGGCGGCGGGCCCGGCATGGCAGCGGCTGGCCGTGCGCGTGCTGGCCGTTTACAAGCAGCGGGCGCAGCCCGTGCGACGCGGCGACCAGGACGCCTGGGTGCCCCGCGCCGACCTGACCTGCGGCTGCCTGCGCCTGCAGCCAGGCACCGACTACCTGCTGCTGGGCAGCGCCGTGGGCGACCCCGACCCCACGCGCCTCATCCTCGACCGCCACGGCCTCGCGCTGCCATGGAGGCCGCGCTGGGCCCGGCCCCTGAAGCGGCTGCAGCAGGAGGAGCGCGCCGGAGGCTGCCGCGGCGTGCGGGCACCCACACCCAGTCCCAGGCCGGAGCACTAGACGTGAGATGGGGCTGCCTCGAGCACCAACAAAGTAATTTGGGAGCGACTAGGAGCTGAGCCTTCTACCTCGACGGTGCACTGCAGAGAGCCAATCAGACGTCGCAGAGCCCCGACGACACTATGCTTGCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.231
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(23.5=28.6)
A:
NO
C2:
PF0175916=NTR=PD(91.7=81.1)
Main Inclusion Isoform:
ENST00000270235fB21470
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGGTACACATGAGCCTT
R:
CTGCTGCAGCCGCTTCAG
Band lengths:
345-1072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains