HsaEX0044066 @ hg38
Exon Skipping
Gene
ENSG00000142233 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr19:48661407-48663814:-
Coord C1 exon
chr19:48663761-48663814
Coord A exon
chr19:48663463-48663543
Coord C2 exon
chr19:48661407-48662041
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACAGCCTGACCCTCCCCAGACC
3' ss Score
5.7
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAATTCCAGAGGCAACAACCACCCTTGCCACTACTCCTGGTGCTTATAGCTCTG
Seq A exon
ACCCTCAGTGTCAAAACTACTGCAATATGTCGGACACCAGGGTACACATGAGCCTTCGGAGGTACTGCCAGCAGGACCATG
Seq C2 exon
TTCTCCGCGCGCAGGTGCTAGCGTCCGAGGCGGCGGGCCCGGCATGGCAGCGGCTGGCCGTGCGCGTGCTGGCCGTTTACAAGCAGCGGGCGCAGCCCGTGCGACGCGGCGACCAGGACGCCTGGGTGCCCCGCGCCGACCTGACCTGCGGCTGCCTGCGCCTGCAGCCAGGCACCGACTACCTGCTGCTGGGCAGCGCCGTGGGCGACCCCGACCCCACGCGCCTCATCCTCGACCGCCACGGCCTCGCGCTGCCATGGAGGCCGCGCTGGGCCCGGCCCCTGAAGCGGCTGCAGCAGGAGGAGCGCGCCGGAGGCTGCCGCGGCGTGCGGGCACCCACACCCAGTCCCAGGCCGGAGCACTAGACGTGAGATGGGGCTGCCTCGAGCACCAACAAAGTAATTTGGGAGCGACTAGGAGCTGAGCCTTCTACCTCGACGGTGCACTGCAGAGAGCCAATCAGACGTCGCAGAGCCCCGACGACACTATGCTTGCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142233_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(23.5=28.6)
C2:
PF0175916=NTR=PD(91.7=81.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAGAGGCAACAACCACC
R:
GCCCGCTGCTTGTAAACGG
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development