RnoEX6002741 @ rn6
Exon Skipping
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101675030-101677596:+
Coord C1 exon
chr1:101675030-101675083
Coord A exon
chr1:101675474-101675554
Coord C2 exon
chr1:101677190-101677596
Length
81 bp
Sequences
Splice sites
3' ss Seq
GAGAGCATGGCCCTCTCCAGACC
3' ss Score
1.26
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GAATTCCAGAAGCAACAACTGCCCTTGCTACTACTCCTGTTGCATCGCGATCAG
Seq A exon
ACCCACAGTGTCAAGGCTACTGCAATGTCTCCGTCAGCAGTGTGCACATGAACCTTCAGAAGTACTGTCAGCAGGACTACG
Seq C2 exon
TTCTGCACGCCCGGGTTGCAGAGTCCGCACAGGTTTCAGCATCATCGTCGTTGTCCTCGTTGTCCGAGGCGGTAGGACCCGAATGGTGGCGGCTGGCCGTGCACGTGCTGGCTGTGTTCAAGCAGCGTGCGTGGCCCGTGCGCCGCGGCAGCCAGGAGGCCTGGGTGCCCCGCGCTGACCTGTCCTGCGGCTGCCTGCGCCTGCGCCCTGGCGCTGACTACCTCCTCCTGGGCAGAGCTGCGGAGAACCACACTGACCCCGCGCACCTCATCCTGAACCGCCACAGCCTCGCGCTGCCCTGGAGGCCACGTTGGGCCGGGCCGCTGCGGCGGCTGCAACAGAAGGAGCGCGGTGGCGCCTGCCGAGGCCTGCTGCCACCCACTCGGAGCCCTGGGCCTAGGAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016-'5-8,'5-5,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(6.6=28.6)
C2:
PF0175916=NTR=PD(92.6=83.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAACTGCCCTTGCTACT
R:
CTGCTTGAACACAGCCAGCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]