DreEX6096446 @ danRer10
Exon Skipping
Gene
ENSDARG00000076748 | ntn2
Description
netrin 2 [Source:ZFIN;Acc:ZDB-GENE-050310-2]
Coordinates
chr24:38838974-38844033:-
Coord C1 exon
chr24:38843980-38844033
Coord A exon
chr24:38842010-38842084
Coord C2 exon
chr24:38838974-38840254
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATGTTTGTTTGTTTGTCAGATT
3' ss Score
8.01
5' ss Seq
ATGGTACGA
5' ss Score
7.82
Exon sequences
Seq C1 exon
AAATCCCGGTTATCAAGCCAACGGCTGTGATCAGCACTACAGAGGAGCCTGCAG
Seq A exon
ATTGTGACTCTTACTGTAAACCACTGAAGGGAAATCTCAAGATAAACATGAAGAAATACTGCAAAAAGGACTATG
Seq C2 exon
CGGTTCAGGTCAGTGTTTTAGACATGGAGACCGTCGGTGACTGGGCCAAATTTTCGGTGAGCCTGATGTCTGTGTACAAGAGTCGCGGAGACCCACTGAAAAGAGGCGATCACATGCTGTGGGTTCACATGAAGGATCTGGCCTGTAAATGTCCTCGGATACACATGGGCAAACGCTTCCTCATCCTGGGCAGCACTGAGGGCACGGCAAACCCTGAACGCCCGGGACTGCAGGCCGACAAAAACAGCCTGGTCATCCAGTGGAGGGACATTTGGACGCGACGACTGCGCAAGTTCCAGCGCAAAGAGAAGAAAGGCAAGTGCAGCAAAGCATGATGGGATTGATGGGAACTCAACTTTATTATTGACCACTGTCCTGCAAGTGCAGGAGACTTGAAACTATTGTCGTCTGTGCGTTTTTGGTGCGTATCGTCCTGATGGTCAGCCTTCTAAAGGGACCGTAAAAAAGACTGCTTCCAATCACACACCACTGAATCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076748-'9-11,'9-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.3=30.8)
C2:
PF0175916=NTR=PD(91.7=89.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACTACAGAGGAGCCTG
R:
TCCGAGGACATTTACAGGCCA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]