BtaEX6108055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045625 | NTN3
Description
Bos taurus netrin 3 (NTN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206905]
Coordinates
chr25:1978937-1979953:+
Coord C1 exon
chr25:1978937-1978987
Coord A exon
chr25:1979123-1979197
Coord C2 exon
chr25:1979539-1979953
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCTCCCTCCTCCCAGACT
3' ss Score
9.56
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
AGACCCCTGTCCCTGGACCCACTGAGGAGAGCAGTCCTGTGGCGCCCCAGG
Seq A exon
ACTGCGACTTGCACTGCAAACCCGCTCGTGGCAGCTACCGCATCAGCCTGAAGAAGTTCTGCAGGAAGGACTACG
Seq C2 exon
CGGTGCAGGTGGCGGTGGGCGCGCGCGGCGAGGCGCGTGGCTCCTGGACGCGCTTCCCGGTGGCCGTGCTCGCCGTGTTCCGGAGCGGCGAGGAGCGCGCCCGGCGCGGGAGCAGCGCGCTGTGGGTGCCGGCGCGGGACGCCGCCTGCGGGTGCCCCCGCCTACTGCCAGGCCGCCGCTACCTGCTGCTGGGGGGCGGGCCGGGGGCCGCGGTCGGGGGCCCCGGGGGCCGGGGGCCGGGGCTCAGCGCCGCCCGCGGGAGCCTCGTGTTGCCCTGGCGGGATGCGTGGACGAGACGCCTTCGGAGGCTGCAGCGGCGCGAGCGGCGGGGGCGCTGTGGGGCTGCCTGAGCCTGCGGGCCGGGCGGGGGCCGGGCGGGCGCTCCCCACTCATCAAGGCTCACCTTCGTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045625-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.0=30.8)
C2:
PF0175916=NTR=PD(92.1=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGCAGTCCTGTGGC
R:
CCCCCAGCAGCAGGTAGC
Band lengths:
222-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]