GgaEX6013194 @ galGal4
Exon Skipping
Gene
ENSGALG00000029072 | NTN3
Description
netrin-3 precursor [Source:RefSeq peptide;Acc:NP_001264534]
Coordinates
chr14:14014723-14021891:-
Coord C1 exon
chr14:14021838-14021891
Coord A exon
chr14:14017714-14017788
Coord C2 exon
chr14:14014723-14017624
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTCCTCCCCTGCAGACT
3' ss Score
12.31
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
AGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCAG
Seq A exon
ACTGTGACTCCTACTGCAAGCCAGCCAAAGGCAACTACAAGATTAACATGAAGAAGTACTGCAAGAAGGATTACG
Seq C2 exon
TGGTCCAAGTGAACATTTTGGAAATGGAGACGGTGGCCAACTGGGCCAAGTTCACCATCAACATCCTCTCTGTCTACAAGTGCCGCGACGAGCGGGTCAAGCGCGGAGACAACTTCTTGTGGATCCACCTCAAGGACCTGTCCTGCAAGTGCCCCAAAATCCAGATCAGCAAGAAGTACCTGGTGATGGGCATCAGCGAGAACTCCACCGACCGGCCGGGACTGATGGCCGACAAGAACAGCCTGGTCATCCAGTGGAGGGACGCCTGGACTCGCCGCCTTCGGAAACTGCAGCGGAGGGAGAAGAAAGGGAAGTGTGTGAAGCCCTGAGGGCCTCGTGCCCCACGCGGGTCCCGGCCCCACTGCACACGCAGACCATGCCCAGAGACTCTGTACATACATATCGTGTGAACGGACTCTTCTGTCTATAGTGTATATTTTGGCAACGGTTCCCCTTTTTGTGTGCGTGTGCACGCGTGGGTGTGTGCACGTGTGTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029072-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCCGACCTCTCTTGTCA
R:
CAGGTCCTTGAGGTGGATCCA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]