MmuEX6075589 @ mm10
Exon Skipping
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24203848-24207443:-
Coord C1 exon
chr17:24207393-24207443
Coord A exon
chr17:24207208-24207282
Coord C2 exon
chr17:24203848-24206947
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCCACTCTTTCCCCCTAGACT
3' ss Score
11.77
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
AGACTCCTGTCCCTGGACCCACCGAAGAAAGCAGTCCTGTGGAGCCACAGG
Seq A exon
ACTGTGAGTCACATTGCAGACCTGCGCGTGGCAGTTACCGAATCAGCCTGAAGAAGTTCTGCCGGAAGGACTATG
Seq C2 exon
CGGTGCAGGTGGCAGTGGGTGCACGCGGTGAGGCCCGCGGCTCGTGGACACGCTTTCCGGTAGCGGTGCTTGCTGTGTTCCGCAGCGGCGAGGAACGCGCTCGACGCGGGAGCAGCGCGCTGTGGGTACCAACTCTAGACGCGGCCTGCGGTTGCCCGCGCCTCCTGCCCGGCCGGCGTTACTTGCTGCTGGGAGGTGGGCCGGGGGCTGCAGCTGGGAGCACAGCGGGCCGGGGACAGGGGCTCAGTGCTGCCCGTGGAAGCCTCGTGCTGCCTTGGAGAGACGCCTGGACCCGGCGCCTGCGGAGGCTGCAGAGGAGAGAGCGGCGGGGGCGCTGCGGGACCGCCTGAATCTGCAAGCTGGGCGTGGACTGGGCGGACTCAGCTCTCTTATCACTGGGCGCGGCGCGTTCATCAGAGCACTAGGCTGGAAGTGTCACGTGCATCGCCATCTAATTTCCCCCTACCCCCATCCCCGCTTGAAACCTATTTGGCGATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-'8-6,'8-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.0=30.8)
C2:
PF0175916=NTR=PD(92.1=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACCGAAGAAAGCAGTC
R:
CGCGTCTAGAGTTGGTACCCA
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types