MmuEX6075589 @ mm9
Exon Skipping
Gene
ENSMUSG00000079662 | Ntn3
Description
netrin 3 [Source:MGI Symbol;Acc:MGI:1341188]
Coordinates
chr17:24340793-24344388:-
Coord C1 exon
chr17:24344338-24344388
Coord A exon
chr17:24344153-24344227
Coord C2 exon
chr17:24340793-24343892
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCCACTCTTTCCCCCTAGACT
3' ss Score
11.77
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
AGACTCCTGTCCCTGGACCCACCGAAGAAAGCAGTCCTGTGGAGCCACAGG
Seq A exon
ACTGTGAGTCACATTGCAGACCTGCGCGTGGCAGTTACCGAATCAGCCTGAAGAAGTTCTGCCGGAAGGACTATG
Seq C2 exon
CGGTGCAGGTGGCAGTGGGTGCACGCGGTGAGGCCCGCGGCTCGTGGACACGCTTTCCGGTAGCGGTGCTTGCTGTGTTCCGCAGCGGCGAGGAACGCGCTCGACGCGGGAGCAGCGCGCTGTGGGTACCAACTCTAGACGCGGCCTGCGGTTGCCCGCGCCTCCTGCCCGGCCGGCGTTACTTGCTGCTGGGAGGTGGGCCGGGGGCTGCAGCTGGGAGCACAGCGGGCCGGGGACAGGGGCTCAGTGCTGCCCGTGGAAGCCTCGTGCTGCCTTGGAGAGACGCCTGGACCCGGCGCCTGCGGAGGCTGCAGAGGAGAGAGCGGCGGGGGCGCTGCGGGACCGCCTGAATCTGCAAGCTGGGCGTGGACTGGGCGGACTCAGCTCTCTTATCACTGGGCGCGGCGCGTTCATCAGAGCACTAGGCTGGAAGTGTCACGTGCATCGCCATCTAATTTCCCCCTACCCCCATCCCCGCTTGAAACCTATTTGGCGATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079662-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.0=30.8)
C2:
PF0175916=NTR=PD(92.1=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACCGAAGAAAGCAGTC
R:
CGCGTCTAGAGTTGGTACCCA
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: