RnoEX6046362 @ rn6
Exon Skipping
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13577725-13578725:-
Coord C1 exon
chr10:13578675-13578725
Coord A exon
chr10:13578484-13578558
Coord C2 exon
chr10:13577725-13578217
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCCACTCTTTCCCCCTAGACT
3' ss Score
11.77
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
AGACTCCTGTCCCTGGACCCACTGAAGAAAGCAGTCCTGTGGAGCCACAGG
Seq A exon
ACTGTGAGTCACATTGCAGACCTGCGCGTGGCAGTTACCGAATCAGCCTGAAGAAGTTCTGCCGAAAGGACTATG
Seq C2 exon
CGGTGCAAGTGGCAGTGGGTGCGCGCGGCGAGGCCCGCGGCGCGTGGACACGCTTTCCGGTAGCGGTGCTTGCTGTGTTCCGCAGCGGCGAGGAGCGCGCTCGGCGCGGGAGCAGCGCGCTGTGGGTACCAACCCTAGATGCGGCTTGCGGTTGCCCGCGCCTCCAGCCCGGCCGGCGCTACTTGCTGCTGGGAGATGGGCCCGGGGCTGCAGCTGGGAGCCCAGCAGGCCGGGGACCGGGGCTCAGTGCTGCCCGTGGAAGTCTCGTGCTGCCTTGGAGGGACGCCTGGACTCGGCGCCTGCGGAGGCTGCAGAGGAGAGAGCGGCGGGGGCGCTGCGGGACCGCTTGAACCTGCAAGCTGGGCGTGGACTGGGCGGGCTCAGTTCTCTTATCACTGGGCGCGGCGCGTTCAACAGAGCATTAGCCTGCTGGAAGTGTCACGTGCATCGCCATCTAATTTCCCCCATCCCCATACCCGCTTGAAACTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970-'7-6,'7-5,9-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.0=30.8)
C2:
PF0175916=NTR=PD(92.1=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGCAGTCCTGTGGAGC
R:
AAGCCGCATCTAGGGTTGGTA
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]