HsaEX6041885 @ hg19
Exon Skipping
Gene
ENSG00000162068 | NTN3
Description
netrin 3 [Source:HGNC Symbol;Acc:8030]
Coordinates
chr16:2523269-2524146:+
Coord C1 exon
chr16:2523269-2523319
Coord A exon
chr16:2523430-2523504
Coord C2 exon
chr16:2523757-2524146
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCCTCCCACCTTCTACCCAGACT
3' ss Score
5.92
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AGACCCCTATCCCTGGACCCACTGAGGACAGCAGCCCTGTGCAGCCCCAGG
Seq A exon
ACTGTGACTCGCACTGCAAACCTGCCCGTGGCAGCTACCGCATCAGCCTAAAGAAGTTCTGCAAGAAGGACTATG
Seq C2 exon
CGGTGCAGGTGGCGGTGGGTGCGCGCGGCGAGGCGCGCGGCGCGTGGACACGCTTCCCGGTGGCGGTGCTCGCCGTGTTCCGGAGCGGAGAGGAGCGCGCGCGGCGCGGGAGTAGCGCGCTGTGGGTGCCCGCCGGGGATGCGGCCTGCGGCTGCCCGCGCCTGCTCCCCGGCCGCCGCTACCTCCTGCTGGGGGGCGGGCCTGGAGCCGCGGCTGGGGGCGCGGGGGGCCGGGGGCCCGGGCTCATCGCCGCCCGCGGAAGCCTCGTGCTACCCTGGAGGGACGCGTGGACGCGGCGCCTGCGGAGGCTGCAGCGACGCGAACGGCGGGGGCGCTGCAGCGCCGCCTGAGCCCGCCGGCTGGGCAGGGCGGCCGCTGCTCCCACATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162068-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.0=30.8)
C2:
PF0175916=NTR=PD(92.1=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCCTGGACCCACTGAGG
R:
ACCCACAGCGCGCTACTC
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)