DreEX0051899 @ danRer10
Exon Skipping
Gene
ENSDARG00000022531 | ntn1b
Description
netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
Coordinates
chr3:25578166-25608519:-
Coord C1 exon
chr3:25608466-25608519
Coord A exon
chr3:25600310-25600384
Coord C2 exon
chr3:25578166-25581412
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGTTATCTTCCTCAGATT
3' ss Score
10.18
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAATTCCAGTTGCTGCTCCCACATCATCATACAGCAGCCCAGACGGGCCCACAG
Seq A exon
ATTGCGACTCGCACTGCAAAGCACCCAAGGGCAAGATGAAGGTCACCATGAAAAAATACTGCAAGAAAGATTTTG
Seq C2 exon
CTGTCCAGGTGCACGTGCTGAAAGGAGACAAGGCAGGTGAATGGTGGAAATTCACCATCAACATCATATCGGTGTATAAGCAGGGTGGACACCGCATCCGCAGAGGAGACCAGCTCCTGTGGGTCAGGGCAAAAGACGTTGCCTGCAAGTGCCCCAAAATCAAACCCGGGAGGAAGTACCTGCTGATGGGCTCCGATGAGGAGGAGGACTCGCGTGGGCAGAGCGGTGTGGTGGCGGACAGGGGCAGCCTACTCATCCCCTGGAAAGACCTGTGGGCCCGTCGCCTCAGAAAGTTCCAGCAGCGCGACAAGAGAGGGAAGTGCTAGAAAAACAGAGAGGAAAAGGAAAGACAAAAATAATGAGCCGAGCGCCTGAAGCTGAGTGATCAGAACTGTGCTGAAGGACAACCAGTCGAGCAGTTTCGCCTTCCGTTGTTTAGAGTTTCTTTTTTTGTTCGTTTGTTTCCCATCAAGATTTTATTTTTTCATATCTTCAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022531-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.3=30.8)
C2:
PF0175916=NTR=PD(91.7=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGCTCCCACATCATCA
R:
GTCTTTTGCCCTGACCCACAG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]