HsaEX6020926 @ hg19
Exon Skipping
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:8029]
Coordinates
chr17:9086233-9147317:+
Coord C1 exon
chr17:9086233-9086286
Coord A exon
chr17:9124485-9124559
Coord C2 exon
chr17:9142957-9147317
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCACCCCCCTGCAGACT
3' ss Score
10.17
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGATCCCTGTAGCGCCGCCGACGACTGCAGCCAGCAGCGTGGAGGAGCCTGAAG
Seq A exon
ACTGCGATTCCTACTGCAAGGCCTCCAAGGGGAAGCTGAAGATTAACATGAAAAAGTACTGCAAGAAGGACTATG
Seq C2 exon
CCGTCCAGATCCACATCCTGAAGGCGGACAAGGCGGGGGACTGGTGGAAGTTCACGGTGAACATCATCTCCGTGTATAAGCAGGGCACGAGCCGCATCCGCCGCGGTGACCAGAGCCTGTGGATCCGCTCGCGGGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACCTGCTGCTGGGCAACGCGGAGGACTCTCCGGACCAGAGCGGCATCGTGGCCGATAAAAGCAGCCTGGTGATCCAGTGGCGGGACACGTGGGCGCGGCGGCTGCGCAAGTTCCAGCAGCGTGAGAAGAAGGGCAAGTGCAAGAAGGCCTAGCGCCGAGGCAGCGGGCGGGCGGGCGGGCGGGCGCCAGGGCGGGGCCGAGCGAGAGCGGGCGCCTTGGCCCGGCCGCCGCGGACTTGGCCCGCGAGGGCTTTCCCAGGTGGGGGGAGGGAGGGGGCGGGGCCGCACGGCGCGGGGGGCGGGACCCTCGGCGGCCCCTCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGGAGGAGCCTGAAG
R:
GATTTTGGGACACTTGCAGGC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)