MmuEX6086363 @ mm9
Exon Skipping
Gene
ENSMUSG00000020902 | Ntn1
Description
netrin 1 [Source:MGI Symbol;Acc:MGI:105088]
Coordinates
chr11:68022866-68071010:-
Coord C1 exon
chr11:68070957-68071010
Coord A exon
chr11:68040038-68040112
Coord C2 exon
chr11:68022866-68026836
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTCTTCCCCTGCAGACT
3' ss Score
12.15
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
AGATTCCTGTGGCGCCACCCACCACTGCAGCCAGCAGCGTGGAGGAACCGGAAG
Seq A exon
ACTGTGACTCCTATTGCAAGGCCTCCAAAGGCAAGCTGAAGATGAACATGAAGAAATACTGCAGGAAGGACTATG
Seq C2 exon
CTGTCCAGATCCACATCCTGAAGGCCGACAAAGCAGGGGACTGGTGGAAGTTCACCGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGGCAAGTGCAAGAAGGCCTAGCGCGGAGGTGGCGCGGGCTCCAGGAGGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTTGGACTTGGCCGTCAGGGGTTTTTTTGGGAGGGTGGGGGCGGGGCGAAGTCGAAGTGGGGCGGGGCCCTCAGCGGCTCCGCCCCAGCCCCACCCTCACACCCCTGGCTGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020902-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCTGTGGCGCCACC
R:
GAGCGGATCCACAAACTCTGG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: