HsaEX6020926 @ hg38
Exon Skipping
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr17:9182916-9244000:+
Coord C1 exon
chr17:9182916-9182969
Coord A exon
chr17:9221168-9221242
Coord C2 exon
chr17:9239640-9244000
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCACCCCCCTGCAGACT
3' ss Score
10.17
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGATCCCTGTAGCGCCGCCGACGACTGCAGCCAGCAGCGTGGAGGAGCCTGAAG
Seq A exon
ACTGCGATTCCTACTGCAAGGCCTCCAAGGGGAAGCTGAAGATTAACATGAAAAAGTACTGCAAGAAGGACTATG
Seq C2 exon
CCGTCCAGATCCACATCCTGAAGGCGGACAAGGCGGGGGACTGGTGGAAGTTCACGGTGAACATCATCTCCGTGTATAAGCAGGGCACGAGCCGCATCCGCCGCGGTGACCAGAGCCTGTGGATCCGCTCGCGGGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACCTGCTGCTGGGCAACGCGGAGGACTCTCCGGACCAGAGCGGCATCGTGGCCGATAAAAGCAGCCTGGTGATCCAGTGGCGGGACACGTGGGCGCGGCGGCTGCGCAAGTTCCAGCAGCGTGAGAAGAAGGGCAAGTGCAAGAAGGCCTAGCGCCGAGGCAGCGGGCGGGCGGGCGGGCGGGCGCCAGGGCGGGGCCGAGCGAGAGCGGGCGCCTTGGCCCGGCCGCCGCGGACTTGGCCCGCGAGGGCTTTCCCAGGTGGGGGGAGGGAGGGGGCGGGGCCGCACGGCGCGGGGGGCGGGACCCTCGGCGGCCCCTCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-'14-22,'14-18,19-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGGAGGAGCCTGAAG
R:
GATTTTGGGACACTTGCAGGC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains