BtaEX6087085 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012137 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr19:29219728-29269338:+
Coord C1 exon
chr19:29219728-29219781
Coord A exon
chr19:29254471-29254545
Coord C2 exon
chr19:29269010-29269338
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCCGTCCCCTGCAGACT
3' ss Score
11.39
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGATCCCTGTGGCACCGCCAACCACTGCAGCCAGCAGCGTGGAGGAGCCCGAAG
Seq A exon
ACTGTGATTCCTACTGCAAGGCCTCCAAAGGGAAGCTGAAGATTAACATGAAAAAATACTGCAAGAAGGACTATG
Seq C2 exon
CCGTCCAGATCCACATCCTGAAGGCAGACAAAGCCGGGGACTGGTGGAAGTTCACGGTGAACATCATCTCCGTGTACAAGCAGGGCACCAGCCGCATCCGCCGGGGTGACCAGAACCTGTGGATCCGCTCGCGGGACATCGCCTGCAAGTGCCCGAAAATCAAGCCCCTCAAGAAGTACCTGCTGCTCGGCAACGCGGAGGACTCACCCGACCAGAGCGGCATCGTGGCGGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCGCGGCGGCTGCGCAAGTTCCAGCAGCGCGAGAAGAAGGGCAAGTGCAAGAAGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012137-'3-6,'3-4,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGCCAACCACTGCAG
R:
GATCCACAGGTTCTGGTCACC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]