DreEX0051894 @ danRer10
Exon Skipping
Gene
ENSDARG00000105112 | ntn1a
Description
netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
Coordinates
chr6:23332727-23355171:-
Coord C1 exon
chr6:23355118-23355171
Coord A exon
chr6:23344479-23344553
Coord C2 exon
chr6:23332727-23337679
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTCCCCCATTTGTAGACT
3' ss Score
9.89
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AAATTCCCATCGCTCCGCCAACCACCACTGCAAGCAGCACAGAAGAGCCATCAG
Seq A exon
ACTGTGAATCCTACTGCAAGGCATCCAAAGGCAAGCTGAAGATCAATATGAAGAAGTACTGCAAGAAAGATTATG
Seq C2 exon
CCGTTCAAGTCCACATCCTGAAAGCAGATAAAGCAGGAGAGTGGTGGAAGTTCACCGTCAACATCATCTCTGTTTACAAACAGGGTGAAAGCCGAATTCGCAGAGGAGACCAGTTCCTCTGGGTCAGGGCAAAGGATGTGGCCTGCAAGTGTCCGAAGATCAAGTCCGGCAAGAAATACCTTCTGCTGGGGAACGACGAGGATTCGCCAGGACAAAGCGGAATGGTGGCGGACAAGGGCAGTCTGGTCATTCAGTGGAGAGACACTTGGGCTCGGAGACTCCGGAAGTTTCAGCAAAGGGAGAAGAAAGGAAAATGCAAGAAAGCATAATGAAGAGAAGAGGAAAGAGCTGACCATTCAGAGCTGGACAGAAAAAACAACAGATAAAGATAAGAAAGATAGACTGAGCATCGCTGCTTTGAATAAAGGCATGAAGAGAATATTAACTTTTTTTTTTTGGTTTGTTTTTAAATGGGAACGTGTGAAGGAGTTCATGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105112-'5-7,'5-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGCACAGAAGAGCCATC
R:
ACTTGCAGGCCACATCCTTTG
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]