RnoEX0061329 @ rn6
Exon Skipping
Gene
ENSRNOG00000003947 | Ntn1
Description
netrin 1 [Source:RGD Symbol;Acc:619809]
Coordinates
chr10:54761871-54806625:-
Coord C1 exon
chr10:54806572-54806625
Coord A exon
chr10:54775822-54775896
Coord C2 exon
chr10:54761871-54762325
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTTCTCCCCTGCAGACT
3' ss Score
12.49
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
AGATTCCTGTAGCGCCACCCACCACTGCAGCCAGCAGCATGGAAGAACCTGAAG
Seq A exon
ACTGTGACTCCTACTGCAAGGCTTCCAAAGGAAAACTGAAGATGAACATGAAGAAATACTGCAGGAAGGACTATG
Seq C2 exon
CTGTCCAGATCCACATTCTGAAGGCGGACAAAGCAGGGGACTGGTGGAAGTTCACAGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATACGCCGTGGTGACCAGAGTTTGTGGATCCGTTCGCGAGACATCGCTTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACCTGCTGCTGGGCAATGCTGAGGACTCGCCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGACGGCTGCGCAAGTTCCAGCAGCGGGAGAAGAAGGGCAAGTGCAAGAAGGCCTAGCGTGGAGGTGGCGCAGGCTCCAGGAGGGCGGGCAGGGCGCTGGCAGGGGCTGGCAGCCTTGGACTTGGCCCGCCAGGGAAGGATGAGTGAGAGTAGAGGGAGAAGGTGAAGGTGGCAGATGGCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003947-'14-10,'14-8,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCATGGAAGAACCTGA
R:
TTTGGGACACTTGCAAGCGAT
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]