GgaEX1040599 @ galGal4
Exon Skipping
Gene
ENSGALG00000023626 | NTN1
Description
Netrin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90922]
Coordinates
chr18:2061909-2066954:+
Coord C1 exon
chr18:2061909-2061962
Coord A exon
chr18:2064501-2064575
Coord C2 exon
chr18:2066626-2066954
Length
75 bp
Sequences
Splice sites
3' ss Seq
GCCTCCCCTCTGCCCCACAGACT
3' ss Score
9.47
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
AGATCCCCGCTGCGCCGCCCCCCACAGCTGCCAGCAGCACGGAGGAGCCCGCAG
Seq A exon
ACTGTGACTCGTACTGCAAAGCCTCCAAGGGGAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAGGACTACG
Seq C2 exon
CTGTGCAGATCCACATCCTGAAAGCGGAAAAAAATGCTGACTGGTGGAAGTTCACCGTCAACATCATCTCCGTCTACAAACAGGGCAGCAACCGGCTGCGGCGCGGGGACCAGACCCTGTGGGTGCACGCCAAGGACATCGCCTGCAAGTGCCCCAAGGTGAAGCCCATGAAGAAGTACCTCCTGCTGGGCAGCACCGAGGACTCTCCCGACCAGAGCGGCATCATCGCGGACAAGAGCAGCCTGGTGATCCAATGGCGGGACACGTGGGCACGGCGGCTGCGGAAGTTCCAGCAGAGGGAGAAGAAGGGGAAGTGTAGGAAGGCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(7.5=30.8)
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]