MmuEX0032528 @ mm9
Exon Skipping
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:52947254-52949924:+
Coord C1 exon
chr7:52947254-52947307
Coord A exon
chr7:52947711-52947791
Coord C2 exon
chr7:52949344-52949924
Length
81 bp
Sequences
Splice sites
3' ss Seq
AAGAGCATGACCCTCTCCAGACC
3' ss Score
0.76
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAATTCCAGAGGCAACAACTACCCCTGCTACTACCCCTGTTGCATCTCGATCAG
Seq A exon
ACCCACAGTGTCAAGGCTATTGCAATGTCTCCGTCAGCAGTGTGCACATGAGCCTTCAGAGATACTGTCAGCAGGATTATG
Seq C2 exon
CTGAGGTGGTGTCTTCCCTCAGTTCTGCACGCCCAGGTTTCAGCGTCGTCGTCGCAGCCGTCTGAGGCGGTGGGCCCCGAGTGGTGGCGGCTGGCCGTGCACGTGCTGGCTGTGTTCAAACAGCGTGCGTGGCCCGTGCGCCGCGGTGGCCAGGAGGCCTGGGTGCCACGTGCTGACCTAATCTGCGGCTGCCTGCGCCTGCGCCCTGGCGCTGACTACCTCCTGCTGGGCCGTGCTGCGCAGACCCACGACGACGACAACTATGACCCTGCGCGCCTCATCCTGAACCGCCACGGCCTCGCGCTGCCCTGGAGACCACGATGGGCCCGGCCGCTGCGGCGACTGCAGCAGAAGGAGCGCGGAGGTGCCTGCCGAGGCCTGCTGCCACCCACACGGAGCCCTGGGCCCAGGAACTAAAGTGAGCTACTAATGTAAGGTGTGAGTCCCCAGAGCCAATCAGAAGCTTCAGTGCCCGTGACGCCACTCCGCATGTGACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564_MULTIEX1-6/7=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.772 A=0.000 C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
PF0175916=NTR=PU(6.8=28.6)
C2:
PF0175916=NTR=PD(92.4=82.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAACTACCCCTGCTAC
R:
CTGTTTGAACACAGCCAGCAC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types